Hb_000685_060

Information

Type -
Description -
Location Contig685: 63096-67211
Sequence    

Annotation

kegg
ID rcu:RCOM_1692030
description ring finger protein, putative
nr
ID XP_002509961.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID B9RCS7
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1692030 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_060 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_003504_040 0.1171595893 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
3 Hb_003299_010 0.1403839406 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
4 Hb_005157_010 0.1628576799 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
5 Hb_001377_500 0.1732171486 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
6 Hb_000608_020 0.1765352749 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
7 Hb_000215_340 0.1781617626 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
8 Hb_067034_030 0.1834846818 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_005841_080 0.1886515091 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
10 Hb_002660_100 0.1898564485 - - plasma membrane intrinsic protein [Hevea brasiliensis]
11 Hb_005147_040 0.1906635811 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
12 Hb_002326_080 0.1930964554 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
13 Hb_000106_070 0.1972694976 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_002918_150 0.2041637701 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
15 Hb_048653_020 0.20455417 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001863_100 0.2047268413 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000670_110 0.2056906166 - - l-asparaginase, putative [Ricinus communis]
18 Hb_124315_030 0.2095478446 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
19 Hb_008616_060 0.2095973492 - - syntaxin, putative [Ricinus communis]
20 Hb_000189_120 0.2113887907 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000685_060 Hb_000685_060 Hb_003504_040 Hb_003504_040 Hb_000685_060--Hb_003504_040 Hb_003299_010 Hb_003299_010 Hb_000685_060--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_000685_060--Hb_005157_010 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340 Hb_002774_090 Hb_002774_090 Hb_003504_040--Hb_002774_090 Hb_003504_040--Hb_003299_010 Hb_003504_040--Hb_005157_010 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_003299_010--Hb_005157_010 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_005157_010--Hb_133636_010 Hb_001195_500 Hb_001195_500 Hb_001377_500--Hb_001195_500 Hb_002035_030 Hb_002035_030 Hb_001377_500--Hb_002035_030 Hb_000000_140 Hb_000000_140 Hb_001377_500--Hb_000000_140 Hb_001377_500--Hb_000608_020 Hb_002609_150 Hb_002609_150 Hb_001377_500--Hb_002609_150 Hb_002272_140 Hb_002272_140 Hb_001377_500--Hb_002272_140 Hb_002660_100 Hb_002660_100 Hb_000608_020--Hb_002660_100 Hb_000429_110 Hb_000429_110 Hb_000608_020--Hb_000429_110 Hb_001558_070 Hb_001558_070 Hb_000608_020--Hb_001558_070 Hb_001259_100 Hb_001259_100 Hb_000608_020--Hb_001259_100 Hb_002928_180 Hb_002928_180 Hb_000608_020--Hb_002928_180 Hb_011214_140 Hb_011214_140 Hb_000215_340--Hb_011214_140 Hb_051100_010 Hb_051100_010 Hb_000215_340--Hb_051100_010 Hb_000215_340--Hb_003299_010 Hb_001009_110 Hb_001009_110 Hb_000215_340--Hb_001009_110 Hb_005736_070 Hb_005736_070 Hb_000215_340--Hb_005736_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.319265 5.30614 0.153546 1.10256 0.133648 0.111768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120316 0.359731 0.358456 2.78106 0.119827

CAGE analysis