Hb_051100_010

Information

Type -
Description -
Location Contig51100: 1878-2696
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18980g
description POPTRDRAFT_833746; hypothetical protein
nr
ID XP_012081690.1
description PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
swissprot
ID Q66PF2
description Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1
trembl
ID A0A067K0Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18726 PE=4 SV=1
Gene Ontology
ID GO:0016758
description udp-rhamnose:rhamnosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46333: 1817-2186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051100_010 0.0 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
2 Hb_135811_060 0.1437855242 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_000521_210 0.1491346092 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
4 Hb_005380_030 0.1520582691 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
5 Hb_015473_010 0.1522948962 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_000856_240 0.1537514488 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_000172_010 0.1564166002 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
8 Hb_001073_060 0.1646064695 - - phosphate transporter 1 [Hevea brasiliensis]
9 Hb_000045_180 0.164775428 - - aquaporin PIP1 [Hevea brasiliensis]
10 Hb_004156_010 0.1653751232 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
11 Hb_002735_010 0.1671336368 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
12 Hb_000152_250 0.1672031068 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
13 Hb_011218_050 0.1686991779 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_005183_200 0.1688378386 - - EG964 [Manihot glaziovii]
15 Hb_000703_320 0.1690273678 - - receptor-kinase, putative [Ricinus communis]
16 Hb_001879_050 0.1725060754 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_017417_030 0.1732372811 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
18 Hb_003439_090 0.1739802434 - - kinase, putative [Ricinus communis]
19 Hb_002660_100 0.1742210517 - - plasma membrane intrinsic protein [Hevea brasiliensis]
20 Hb_003430_020 0.175242104 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_051100_010 Hb_051100_010 Hb_135811_060 Hb_135811_060 Hb_051100_010--Hb_135811_060 Hb_000521_210 Hb_000521_210 Hb_051100_010--Hb_000521_210 Hb_005380_030 Hb_005380_030 Hb_051100_010--Hb_005380_030 Hb_015473_010 Hb_015473_010 Hb_051100_010--Hb_015473_010 Hb_000856_240 Hb_000856_240 Hb_051100_010--Hb_000856_240 Hb_000172_010 Hb_000172_010 Hb_051100_010--Hb_000172_010 Hb_017417_030 Hb_017417_030 Hb_135811_060--Hb_017417_030 Hb_135811_060--Hb_000856_240 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_000045_180 Hb_000045_180 Hb_135811_060--Hb_000045_180 Hb_149056_010 Hb_149056_010 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080 Hb_000101_140 Hb_000101_140 Hb_000521_210--Hb_000101_140 Hb_084127_010 Hb_084127_010 Hb_000521_210--Hb_084127_010 Hb_000521_210--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_000521_210--Hb_000579_220 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120 Hb_005380_030--Hb_000703_320 Hb_002110_210 Hb_002110_210 Hb_005380_030--Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_005380_030--Hb_002241_020 Hb_005147_020 Hb_005147_020 Hb_005380_030--Hb_005147_020 Hb_002248_090 Hb_002248_090 Hb_005380_030--Hb_002248_090 Hb_002735_010 Hb_002735_010 Hb_005380_030--Hb_002735_010 Hb_015473_010--Hb_000152_250 Hb_015473_010--Hb_002735_010 Hb_015473_010--Hb_000521_210 Hb_015473_010--Hb_002110_210 Hb_003439_090 Hb_003439_090 Hb_015473_010--Hb_003439_090 Hb_001823_070 Hb_001823_070 Hb_015473_010--Hb_001823_070 Hb_000856_240--Hb_149056_010 Hb_000255_020 Hb_000255_020 Hb_000856_240--Hb_000255_020 Hb_001073_060 Hb_001073_060 Hb_000856_240--Hb_001073_060 Hb_000856_240--Hb_000579_220 Hb_000172_010--Hb_000579_220 Hb_006615_190 Hb_006615_190 Hb_000172_010--Hb_006615_190 Hb_007237_090 Hb_007237_090 Hb_000172_010--Hb_007237_090 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000072_160 Hb_000072_160 Hb_000172_010--Hb_000072_160 Hb_000172_010--Hb_084127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.846896 67.2722 2.13642 26.4919 0.110504 0.0502926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.63696 33.186 4.24379

CAGE analysis