Hb_003504_040

Information

Type -
Description -
Location Contig3504: 37549-38994
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03480g
description POPTRDRAFT_573711; phosphoenolpyruvate-carboxylase kinase family protein
nr
ID XP_012089319.1
description PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
swissprot
ID Q93VK0
description Phosphoenolpyruvate carboxylase kinase 2 OS=Arabidopsis thaliana GN=PPCK2 PE=1 SV=2
trembl
ID A0A067JIF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23539 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phosphoenolpyruvate carboxylase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36493: 37718-38981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003504_040 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
2 Hb_000685_060 0.1171595893 - - ring finger protein, putative [Ricinus communis]
3 Hb_002774_090 0.1381021993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003299_010 0.1501982595 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_005157_010 0.1705345434 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_067034_030 0.1721254574 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_008616_060 0.1734423852 - - syntaxin, putative [Ricinus communis]
8 Hb_001377_500 0.1834478228 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
9 Hb_005147_040 0.1841709224 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
10 Hb_044724_010 0.1915262906 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
11 Hb_000106_070 0.1984137982 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
12 Hb_001318_130 0.2004846073 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
13 Hb_000670_110 0.2026137136 - - l-asparaginase, putative [Ricinus communis]
14 Hb_001248_030 0.2034205984 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000189_120 0.2049105912 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
16 Hb_000997_110 0.205461908 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
17 Hb_003052_200 0.2079583032 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
18 Hb_006026_010 0.2089850687 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
19 Hb_002326_080 0.2124361625 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
20 Hb_000679_240 0.2133824993 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_003504_040 Hb_003504_040 Hb_000685_060 Hb_000685_060 Hb_003504_040--Hb_000685_060 Hb_002774_090 Hb_002774_090 Hb_003504_040--Hb_002774_090 Hb_003299_010 Hb_003299_010 Hb_003504_040--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003504_040--Hb_005157_010 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_000685_060--Hb_003299_010 Hb_000685_060--Hb_005157_010 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340 Hb_044724_010 Hb_044724_010 Hb_002774_090--Hb_044724_010 Hb_005779_040 Hb_005779_040 Hb_002774_090--Hb_005779_040 Hb_002805_300 Hb_002805_300 Hb_002774_090--Hb_002805_300 Hb_001318_130 Hb_001318_130 Hb_002774_090--Hb_001318_130 Hb_002774_090--Hb_067034_030 Hb_003299_010--Hb_005157_010 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_005157_010--Hb_133636_010 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_000679_240 Hb_000679_240 Hb_067034_030--Hb_000679_240 Hb_006501_170 Hb_006501_170 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_000521_300 Hb_000521_300 Hb_067034_030--Hb_000521_300 Hb_004230_060 Hb_004230_060 Hb_008616_060--Hb_004230_060 Hb_001810_010 Hb_001810_010 Hb_008616_060--Hb_001810_010 Hb_002217_440 Hb_002217_440 Hb_008616_060--Hb_002217_440 Hb_000333_130 Hb_000333_130 Hb_008616_060--Hb_000333_130 Hb_010962_030 Hb_010962_030 Hb_008616_060--Hb_010962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.46436 101.748 4.61564 17.8277 1.57874 2.37183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36142 8.35926 1.35944 52.3013 3.259

CAGE analysis