Hb_005779_040

Information

Type -
Description -
Location Contig5779: 25403-27258
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49713: 24309-25317 , PASA_asmbl_49714: 26053-26290 , PASA_asmbl_49715: 26308-27015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_040 0.0 - - -
2 Hb_044724_010 0.1712754629 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
3 Hb_002774_090 0.1742733818 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000589_220 0.2020147633 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_003894_100 0.2098724209 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
6 Hb_000679_240 0.22803183 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
7 Hb_067034_030 0.2319720107 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_003504_040 0.2406671943 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
9 Hb_007218_160 0.2406804757 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
10 Hb_008667_060 0.2429578379 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_000002_270 0.2433412424 - - hypothetical protein VITISV_043897 [Vitis vinifera]
12 Hb_003371_140 0.2439229341 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
13 Hb_003120_040 0.2447162081 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
14 Hb_007259_040 0.2461887788 - - hypothetical protein VITISV_005492 [Vitis vinifera]
15 Hb_000081_120 0.2467286077 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
16 Hb_000000_240 0.2486293528 - - PREDICTED: protein LYK5-like [Jatropha curcas]
17 Hb_006573_300 0.248667566 - - ATP binding protein, putative [Ricinus communis]
18 Hb_111985_040 0.2507751577 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
19 Hb_000084_220 0.2530627542 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
20 Hb_000996_130 0.2537335195 - - PREDICTED: remorin-like [Populus euphratica]

Gene co-expression network

sample Hb_005779_040 Hb_005779_040 Hb_044724_010 Hb_044724_010 Hb_005779_040--Hb_044724_010 Hb_002774_090 Hb_002774_090 Hb_005779_040--Hb_002774_090 Hb_000589_220 Hb_000589_220 Hb_005779_040--Hb_000589_220 Hb_003894_100 Hb_003894_100 Hb_005779_040--Hb_003894_100 Hb_000679_240 Hb_000679_240 Hb_005779_040--Hb_000679_240 Hb_067034_030 Hb_067034_030 Hb_005779_040--Hb_067034_030 Hb_044724_010--Hb_002774_090 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_004410_150 Hb_004410_150 Hb_044724_010--Hb_004410_150 Hb_044724_010--Hb_003894_100 Hb_003504_040 Hb_003504_040 Hb_044724_010--Hb_003504_040 Hb_002774_090--Hb_003504_040 Hb_002805_300 Hb_002805_300 Hb_002774_090--Hb_002805_300 Hb_001318_130 Hb_001318_130 Hb_002774_090--Hb_001318_130 Hb_002774_090--Hb_067034_030 Hb_000236_110 Hb_000236_110 Hb_000589_220--Hb_000236_110 Hb_013749_060 Hb_013749_060 Hb_000589_220--Hb_013749_060 Hb_000589_220--Hb_003894_100 Hb_000778_020 Hb_000778_020 Hb_000589_220--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_000589_220--Hb_001410_010 Hb_057079_020 Hb_057079_020 Hb_000589_220--Hb_057079_020 Hb_001369_160 Hb_001369_160 Hb_003894_100--Hb_001369_160 Hb_002447_150 Hb_002447_150 Hb_003894_100--Hb_002447_150 Hb_008667_060 Hb_008667_060 Hb_003894_100--Hb_008667_060 Hb_002928_180 Hb_002928_180 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080 Hb_000679_240--Hb_067034_030 Hb_000589_180 Hb_000589_180 Hb_000679_240--Hb_000589_180 Hb_000521_300 Hb_000521_300 Hb_000679_240--Hb_000521_300 Hb_002555_020 Hb_002555_020 Hb_000679_240--Hb_002555_020 Hb_004195_190 Hb_004195_190 Hb_000679_240--Hb_004195_190 Hb_000086_370 Hb_000086_370 Hb_000679_240--Hb_000086_370 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_006501_170 Hb_006501_170 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_067034_030--Hb_000521_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154891 1.01284 0.121179 0.279115 0 0.0145783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328953 0.155274 0 0.733887 0.270177

CAGE analysis