Hb_044724_010

Information

Type -
Description -
Location Contig44724: 4777-12590
Sequence    

Annotation

kegg
ID mtr:MTR_5g025930
description Kinase-like protein
nr
ID KDP44808.1
description hypothetical protein JCGZ_01308 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044724_010 0.0 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
2 Hb_002774_090 0.1553154023 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007259_040 0.1668433466 - - hypothetical protein VITISV_005492 [Vitis vinifera]
4 Hb_005779_040 0.1712754629 - - -
5 Hb_004410_150 0.1825310181 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
6 Hb_003894_100 0.189481228 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
7 Hb_003504_040 0.1915262906 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
8 Hb_067034_030 0.1924570019 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_003371_120 0.1928863619 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
10 Hb_000645_240 0.1974569166 - - AMP dependent ligase, putative [Ricinus communis]
11 Hb_013818_040 0.1979410621 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
12 Hb_001248_030 0.2020037766 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_020805_170 0.2029142786 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
14 Hb_003544_070 0.2133955117 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000997_110 0.2137003544 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_000081_120 0.214043985 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
17 Hb_000189_120 0.2148249995 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
18 Hb_006026_010 0.2155239328 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
19 Hb_001635_050 0.2159967686 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
20 Hb_000002_270 0.2163838674 - - hypothetical protein VITISV_043897 [Vitis vinifera]

Gene co-expression network

sample Hb_044724_010 Hb_044724_010 Hb_002774_090 Hb_002774_090 Hb_044724_010--Hb_002774_090 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_005779_040 Hb_005779_040 Hb_044724_010--Hb_005779_040 Hb_004410_150 Hb_004410_150 Hb_044724_010--Hb_004410_150 Hb_003894_100 Hb_003894_100 Hb_044724_010--Hb_003894_100 Hb_003504_040 Hb_003504_040 Hb_044724_010--Hb_003504_040 Hb_002774_090--Hb_003504_040 Hb_002774_090--Hb_005779_040 Hb_002805_300 Hb_002805_300 Hb_002774_090--Hb_002805_300 Hb_001318_130 Hb_001318_130 Hb_002774_090--Hb_001318_130 Hb_067034_030 Hb_067034_030 Hb_002774_090--Hb_067034_030 Hb_001248_030 Hb_001248_030 Hb_007259_040--Hb_001248_030 Hb_000645_210 Hb_000645_210 Hb_007259_040--Hb_000645_210 Hb_002304_140 Hb_002304_140 Hb_007259_040--Hb_002304_140 Hb_006717_070 Hb_006717_070 Hb_007259_040--Hb_006717_070 Hb_004195_110 Hb_004195_110 Hb_007259_040--Hb_004195_110 Hb_000589_220 Hb_000589_220 Hb_005779_040--Hb_000589_220 Hb_005779_040--Hb_003894_100 Hb_000679_240 Hb_000679_240 Hb_005779_040--Hb_000679_240 Hb_005779_040--Hb_067034_030 Hb_001625_010 Hb_001625_010 Hb_004410_150--Hb_001625_010 Hb_004410_150--Hb_002805_300 Hb_001799_190 Hb_001799_190 Hb_004410_150--Hb_001799_190 Hb_004410_150--Hb_001248_030 Hb_002524_030 Hb_002524_030 Hb_004410_150--Hb_002524_030 Hb_001369_160 Hb_001369_160 Hb_003894_100--Hb_001369_160 Hb_002447_150 Hb_002447_150 Hb_003894_100--Hb_002447_150 Hb_008667_060 Hb_008667_060 Hb_003894_100--Hb_008667_060 Hb_003894_100--Hb_000589_220 Hb_002928_180 Hb_002928_180 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080 Hb_000685_060 Hb_000685_060 Hb_003504_040--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_003504_040--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003504_040--Hb_005157_010 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0770117 0.470658 0.0345467 0.0951443 0.0437115 0.0225646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126437 0.0452278 0 0.372696 0.0581067

CAGE analysis