Hb_001318_130

Information

Type -
Description -
Location Contig1318: 119379-120243
Sequence    

Annotation

kegg
ID vvi:100250275
description short-chain dehydrogenase reductase 3b-like
nr
ID XP_011040603.1
description PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
swissprot
ID Q94K41
description Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=1
trembl
ID A0A067K928
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14085 PE=3 SV=1
Gene Ontology
ID GO:0016491
description short-chain dehydrogenase reductase 3b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_130 0.0 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
2 Hb_006198_170 0.1916572125 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
3 Hb_012055_100 0.1928124315 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
4 Hb_003504_040 0.2004846073 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
5 Hb_001863_100 0.2201169964 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002774_090 0.2203082234 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006198_140 0.2211807998 - - hypothetical protein L484_015208 [Morus notabilis]
8 Hb_000260_320 0.2233939313 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
9 Hb_000877_090 0.2253865574 - - allergenic-related protein Pt2L4 [Manihot esculenta]
10 Hb_000170_230 0.226924967 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
11 Hb_000685_060 0.2299881425 - - ring finger protein, putative [Ricinus communis]
12 Hb_011218_050 0.2315569755 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_000417_290 0.2353985168 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005424_070 0.2358063988 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
15 Hb_002417_030 0.2360869781 - - PREDICTED: purine permease 3-like [Jatropha curcas]
16 Hb_000625_110 0.2393396842 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
17 Hb_046117_050 0.2438630012 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
18 Hb_005081_080 0.2450726493 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
19 Hb_000532_060 0.2455654938 - - copper-transporting atpase p-type, putative [Ricinus communis]
20 Hb_038758_010 0.2462988931 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001318_130 Hb_001318_130 Hb_006198_170 Hb_006198_170 Hb_001318_130--Hb_006198_170 Hb_012055_100 Hb_012055_100 Hb_001318_130--Hb_012055_100 Hb_003504_040 Hb_003504_040 Hb_001318_130--Hb_003504_040 Hb_001863_100 Hb_001863_100 Hb_001318_130--Hb_001863_100 Hb_002774_090 Hb_002774_090 Hb_001318_130--Hb_002774_090 Hb_006198_140 Hb_006198_140 Hb_001318_130--Hb_006198_140 Hb_006616_050 Hb_006616_050 Hb_006198_170--Hb_006616_050 Hb_000233_060 Hb_000233_060 Hb_006198_170--Hb_000233_060 Hb_002217_440 Hb_002217_440 Hb_006198_170--Hb_002217_440 Hb_066262_020 Hb_066262_020 Hb_006198_170--Hb_066262_020 Hb_004652_050 Hb_004652_050 Hb_006198_170--Hb_004652_050 Hb_066262_010 Hb_066262_010 Hb_006198_170--Hb_066262_010 Hb_000260_320 Hb_000260_320 Hb_012055_100--Hb_000260_320 Hb_000877_090 Hb_000877_090 Hb_012055_100--Hb_000877_090 Hb_046117_050 Hb_046117_050 Hb_012055_100--Hb_046117_050 Hb_000532_060 Hb_000532_060 Hb_012055_100--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_012055_100--Hb_001487_020 Hb_150643_010 Hb_150643_010 Hb_012055_100--Hb_150643_010 Hb_000685_060 Hb_000685_060 Hb_003504_040--Hb_000685_060 Hb_003504_040--Hb_002774_090 Hb_003299_010 Hb_003299_010 Hb_003504_040--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003504_040--Hb_005157_010 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_000333_130 Hb_000333_130 Hb_001863_100--Hb_000333_130 Hb_003938_010 Hb_003938_010 Hb_001863_100--Hb_003938_010 Hb_001863_100--Hb_012055_100 Hb_005081_080 Hb_005081_080 Hb_001863_100--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001863_100--Hb_000703_320 Hb_001863_100--Hb_000260_320 Hb_044724_010 Hb_044724_010 Hb_002774_090--Hb_044724_010 Hb_005779_040 Hb_005779_040 Hb_002774_090--Hb_005779_040 Hb_002805_300 Hb_002805_300 Hb_002774_090--Hb_002805_300 Hb_002774_090--Hb_067034_030 Hb_183209_010 Hb_183209_010 Hb_006198_140--Hb_183209_010 Hb_000935_070 Hb_000935_070 Hb_006198_140--Hb_000935_070 Hb_001227_020 Hb_001227_020 Hb_006198_140--Hb_001227_020 Hb_001558_070 Hb_001558_070 Hb_006198_140--Hb_001558_070 Hb_001021_140 Hb_001021_140 Hb_006198_140--Hb_001021_140 Hb_006198_140--Hb_001863_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0674061 1.04525 0 0.2153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687405 0.0540495 0 0.350204 0

CAGE analysis