Hb_004652_050

Information

Type -
Description -
Location Contig4652: 31889-32524
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15360g
description hypothetical protein
nr
ID XP_006368974.1
description hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9MUS9
description Serine/threonine-protein kinase OS=Populus trichocarpa GN=POPTR_0001s15360g PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004652_050 0.0 - - hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
2 Hb_066262_010 0.1195032459 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
3 Hb_000233_060 0.1203584048 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
4 Hb_039650_010 0.1226284087 - - cellulose synthase-like protein [Populus tomentosa]
5 Hb_008707_020 0.1255242904 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000284_060 0.130188612 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
7 Hb_000767_040 0.133065055 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002025_370 0.1340188026 - - monooxygenase, putative [Ricinus communis]
9 Hb_001274_040 0.1382608578 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
10 Hb_011924_030 0.1390851219 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000035_360 0.139877989 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
12 Hb_001376_020 0.1412745956 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
13 Hb_003847_140 0.1427830102 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
14 Hb_005081_060 0.1507820996 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
15 Hb_006616_050 0.1518453672 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_000111_130 0.1521847794 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
17 Hb_004940_090 0.153444197 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_011925_010 0.1561204282 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
19 Hb_000039_100 0.1563024303 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
20 Hb_000871_020 0.1579798189 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004652_050 Hb_004652_050 Hb_066262_010 Hb_066262_010 Hb_004652_050--Hb_066262_010 Hb_000233_060 Hb_000233_060 Hb_004652_050--Hb_000233_060 Hb_039650_010 Hb_039650_010 Hb_004652_050--Hb_039650_010 Hb_008707_020 Hb_008707_020 Hb_004652_050--Hb_008707_020 Hb_000284_060 Hb_000284_060 Hb_004652_050--Hb_000284_060 Hb_000767_040 Hb_000767_040 Hb_004652_050--Hb_000767_040 Hb_003847_140 Hb_003847_140 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000879_100 Hb_000879_100 Hb_066262_010--Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_066262_010--Hb_005643_010 Hb_066262_010--Hb_000233_060 Hb_119441_010 Hb_119441_010 Hb_066262_010--Hb_119441_010 Hb_000035_360 Hb_000035_360 Hb_000233_060--Hb_000035_360 Hb_001331_050 Hb_001331_050 Hb_000233_060--Hb_001331_050 Hb_066262_020 Hb_066262_020 Hb_000233_060--Hb_066262_020 Hb_011924_030 Hb_011924_030 Hb_000233_060--Hb_011924_030 Hb_002067_110 Hb_002067_110 Hb_000233_060--Hb_002067_110 Hb_005000_230 Hb_005000_230 Hb_039650_010--Hb_005000_230 Hb_039650_010--Hb_008707_020 Hb_039650_010--Hb_011924_030 Hb_039650_010--Hb_000284_060 Hb_002025_370 Hb_002025_370 Hb_039650_010--Hb_002025_370 Hb_005081_060 Hb_005081_060 Hb_039650_010--Hb_005081_060 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_008707_020--Hb_000035_360 Hb_008707_020--Hb_003847_140 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130 Hb_000284_060--Hb_011924_030 Hb_000284_060--Hb_000035_360 Hb_000284_060--Hb_008707_020 Hb_000871_020 Hb_000871_020 Hb_000284_060--Hb_000871_020 Hb_000284_060--Hb_000233_060 Hb_001274_040 Hb_001274_040 Hb_000767_040--Hb_001274_040 Hb_000767_040--Hb_066262_010 Hb_000767_040--Hb_005081_060 Hb_000111_130 Hb_000111_130 Hb_000767_040--Hb_000111_130 Hb_000119_050 Hb_000119_050 Hb_000767_040--Hb_000119_050 Hb_000767_040--Hb_003847_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141304 4.69497 0.0626651 0.154457 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.595653 0.142264

CAGE analysis