Hb_006198_170

Information

Type -
Description -
Location Contig6198: 116078-118066
Sequence    

Annotation

kegg
ID rcu:RCOM_1720970
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012085838.1
description PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
swissprot
ID Q9SFT7
description Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1
trembl
ID A0A0D3E3N8
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase at3g07070-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_170 0.0 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
2 Hb_006616_050 0.1682124012 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_000233_060 0.1734033988 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
4 Hb_002217_440 0.176432508 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_066262_020 0.1786477651 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
6 Hb_004652_050 0.1788708776 - - hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
7 Hb_066262_010 0.1839489154 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
8 Hb_045810_010 0.1871788893 - - PREDICTED: laccase-12-like [Jatropha curcas]
9 Hb_002067_110 0.1900269365 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
10 Hb_013057_030 0.1909402726 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000035_360 0.1914525055 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
12 Hb_001318_130 0.1916572125 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
13 Hb_000417_290 0.1937936032 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001331_050 0.1942240967 - - hypothetical protein VITISV_022439 [Vitis vinifera]
15 Hb_004586_380 0.1971751076 - - purine transporter, putative [Ricinus communis]
16 Hb_005643_010 0.1983593258 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_000627_140 0.1990637843 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000796_100 0.2001863927 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_000844_020 0.2004680049 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
20 Hb_006351_080 0.2010047216 - - hypothetical protein B456_011G275400 [Gossypium raimondii]

Gene co-expression network

sample Hb_006198_170 Hb_006198_170 Hb_006616_050 Hb_006616_050 Hb_006198_170--Hb_006616_050 Hb_000233_060 Hb_000233_060 Hb_006198_170--Hb_000233_060 Hb_002217_440 Hb_002217_440 Hb_006198_170--Hb_002217_440 Hb_066262_020 Hb_066262_020 Hb_006198_170--Hb_066262_020 Hb_004652_050 Hb_004652_050 Hb_006198_170--Hb_004652_050 Hb_066262_010 Hb_066262_010 Hb_006198_170--Hb_066262_010 Hb_064855_010 Hb_064855_010 Hb_006616_050--Hb_064855_010 Hb_000796_100 Hb_000796_100 Hb_006616_050--Hb_000796_100 Hb_000844_020 Hb_000844_020 Hb_006616_050--Hb_000844_020 Hb_001271_040 Hb_001271_040 Hb_006616_050--Hb_001271_040 Hb_006616_050--Hb_066262_020 Hb_006452_140 Hb_006452_140 Hb_006616_050--Hb_006452_140 Hb_000035_360 Hb_000035_360 Hb_000233_060--Hb_000035_360 Hb_000233_060--Hb_066262_010 Hb_001331_050 Hb_001331_050 Hb_000233_060--Hb_001331_050 Hb_000233_060--Hb_066262_020 Hb_011924_030 Hb_011924_030 Hb_000233_060--Hb_011924_030 Hb_002067_110 Hb_002067_110 Hb_000233_060--Hb_002067_110 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_001810_010 Hb_001810_010 Hb_002217_440--Hb_001810_010 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_008616_060 Hb_008616_060 Hb_002217_440--Hb_008616_060 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_066262_020--Hb_064855_010 Hb_066262_020--Hb_000844_020 Hb_066262_020--Hb_002067_110 Hb_066262_020--Hb_001271_040 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_004652_050--Hb_066262_010 Hb_004652_050--Hb_000233_060 Hb_039650_010 Hb_039650_010 Hb_004652_050--Hb_039650_010 Hb_008707_020 Hb_008707_020 Hb_004652_050--Hb_008707_020 Hb_000284_060 Hb_000284_060 Hb_004652_050--Hb_000284_060 Hb_000767_040 Hb_000767_040 Hb_004652_050--Hb_000767_040 Hb_003847_140 Hb_003847_140 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000879_100 Hb_000879_100 Hb_066262_010--Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_066262_010--Hb_005643_010 Hb_119441_010 Hb_119441_010 Hb_066262_010--Hb_119441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.438039 7.95339 0.0299316 0.405108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178085 0.105057 0 1.3909 0

CAGE analysis