Hb_002217_440

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2217: 368019-369927
Sequence    

Annotation

kegg
ID rcu:RCOM_1000990
description WRKY transcription factor, putative
nr
ID XP_002519250.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9FGZ4
description Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1
trembl
ID B9RZT1
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1000990 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_440 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_013057_030 0.1104496131 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001810_010 0.134670149 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
4 Hb_048653_020 0.153049386 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000417_290 0.1539054631 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008616_060 0.1592853118 - - syntaxin, putative [Ricinus communis]
7 Hb_048653_040 0.1643697122 - - ankyrin repeat family protein [Populus trichocarpa]
8 Hb_000142_020 0.1711258177 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_006198_170 0.176432508 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
10 Hb_038758_010 0.1768917252 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_001514_040 0.1886352914 - - l-asparaginase, putative [Ricinus communis]
12 Hb_000172_300 0.1902701278 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
13 Hb_000627_140 0.1911768701 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001486_130 0.192061401 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
15 Hb_000940_020 0.1958234078 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
16 Hb_005588_020 0.1971024692 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
17 Hb_000035_360 0.1988703341 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
18 Hb_000284_060 0.199655491 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
19 Hb_008707_020 0.1997761124 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003442_050 0.2007832462 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_440 Hb_002217_440 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_001810_010 Hb_001810_010 Hb_002217_440--Hb_001810_010 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_008616_060 Hb_008616_060 Hb_002217_440--Hb_008616_060 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_013057_030--Hb_048653_020 Hb_000172_300 Hb_000172_300 Hb_013057_030--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_013057_030--Hb_116349_050 Hb_003086_050 Hb_003086_050 Hb_013057_030--Hb_003086_050 Hb_012268_010 Hb_012268_010 Hb_001810_010--Hb_012268_010 Hb_000940_020 Hb_000940_020 Hb_001810_010--Hb_000940_020 Hb_005396_100 Hb_005396_100 Hb_001810_010--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_001810_010--Hb_001363_010 Hb_000345_190 Hb_000345_190 Hb_001810_010--Hb_000345_190 Hb_002918_150 Hb_002918_150 Hb_048653_020--Hb_002918_150 Hb_138575_010 Hb_138575_010 Hb_048653_020--Hb_138575_010 Hb_048653_020--Hb_003086_050 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_000627_140 Hb_000627_140 Hb_000417_290--Hb_000627_140 Hb_004586_380 Hb_004586_380 Hb_000417_290--Hb_004586_380 Hb_045810_010 Hb_045810_010 Hb_000417_290--Hb_045810_010 Hb_000532_060 Hb_000532_060 Hb_000417_290--Hb_000532_060 Hb_001691_190 Hb_001691_190 Hb_000417_290--Hb_001691_190 Hb_006351_080 Hb_006351_080 Hb_000417_290--Hb_006351_080 Hb_004230_060 Hb_004230_060 Hb_008616_060--Hb_004230_060 Hb_008616_060--Hb_001810_010 Hb_000333_130 Hb_000333_130 Hb_008616_060--Hb_000333_130 Hb_003504_040 Hb_003504_040 Hb_008616_060--Hb_003504_040 Hb_010962_030 Hb_010962_030 Hb_008616_060--Hb_010962_030 Hb_048653_040--Hb_000172_300 Hb_000039_100 Hb_000039_100 Hb_048653_040--Hb_000039_100 Hb_011054_030 Hb_011054_030 Hb_048653_040--Hb_011054_030 Hb_001437_200 Hb_001437_200 Hb_048653_040--Hb_001437_200 Hb_055706_010 Hb_055706_010 Hb_048653_040--Hb_055706_010 Hb_048653_040--Hb_116349_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5496 108.261 3.19307 4.03518 1.50083 0.323286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10527 2.86757 2.5075 20.9204 0.361934

CAGE analysis