Hb_004230_060

Information

Type -
Description -
Location Contig4230: 53279-55877
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13260g
description POPTRDRAFT_825375; ferritin precursor family protein
nr
ID XP_011046818.1
description PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
swissprot
ID Q948P6
description Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1
trembl
ID B9IGG8
description Ferritin OS=Populus trichocarpa GN=POPTR_0016s13260g PE=3 SV=1
Gene Ontology
ID GO:0005623
description ferritin precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41860: 53283-55847 , PASA_asmbl_41861: 53280-55847 , PASA_asmbl_41862: 54620-54938
cDNA
(Sanger)
(ID:Location)		 002_K21.ab1: 53778-55847 , 037_A15.ab1: 54027-55847 , 048_F23.ab1: 54027-55847

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004230_060 0.0 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
2 Hb_001514_100 0.1157289353 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
3 Hb_002085_070 0.1443836575 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000417_030 0.1460672465 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
5 Hb_008616_060 0.1468746582 - - syntaxin, putative [Ricinus communis]
6 Hb_000223_050 0.1513622722 - - PREDICTED: endochitinase A-like [Jatropha curcas]
7 Hb_010962_030 0.1546750788 - - kinase, putative [Ricinus communis]
8 Hb_000395_030 0.1555850007 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_002294_010 0.1571428321 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
10 Hb_002518_270 0.1593995349 - - glycogen phosphorylase, putative [Ricinus communis]
11 Hb_118777_010 0.1650797702 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_008948_080 0.1654727765 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
13 Hb_000512_080 0.1671645131 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_021596_070 0.1672112832 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
15 Hb_157980_010 0.1683174436 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
16 Hb_012018_020 0.1700303229 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
17 Hb_005054_300 0.1708757257 - - aquaporin [Hevea brasiliensis]
18 Hb_003636_010 0.1711653677 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
19 Hb_000070_140 0.1742806154 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_001810_010 0.1752272511 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_004230_060 Hb_004230_060 Hb_001514_100 Hb_001514_100 Hb_004230_060--Hb_001514_100 Hb_002085_070 Hb_002085_070 Hb_004230_060--Hb_002085_070 Hb_000417_030 Hb_000417_030 Hb_004230_060--Hb_000417_030 Hb_008616_060 Hb_008616_060 Hb_004230_060--Hb_008616_060 Hb_000223_050 Hb_000223_050 Hb_004230_060--Hb_000223_050 Hb_010962_030 Hb_010962_030 Hb_004230_060--Hb_010962_030 Hb_001514_100--Hb_002085_070 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_012018_020 Hb_012018_020 Hb_001514_100--Hb_012018_020 Hb_000002_100 Hb_000002_100 Hb_001514_100--Hb_000002_100 Hb_000521_290 Hb_000521_290 Hb_001514_100--Hb_000521_290 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_000417_030--Hb_001514_100 Hb_000417_030--Hb_002294_010 Hb_000417_030--Hb_012018_020 Hb_000417_030--Hb_000002_100 Hb_000417_030--Hb_010962_030 Hb_001810_010 Hb_001810_010 Hb_008616_060--Hb_001810_010 Hb_002217_440 Hb_002217_440 Hb_008616_060--Hb_002217_440 Hb_000333_130 Hb_000333_130 Hb_008616_060--Hb_000333_130 Hb_003504_040 Hb_003504_040 Hb_008616_060--Hb_003504_040 Hb_008616_060--Hb_010962_030 Hb_000512_080 Hb_000512_080 Hb_000223_050--Hb_000512_080 Hb_000075_110 Hb_000075_110 Hb_000223_050--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000223_050--Hb_006970_150 Hb_001481_030 Hb_001481_030 Hb_000223_050--Hb_001481_030 Hb_165404_010 Hb_165404_010 Hb_000223_050--Hb_165404_010 Hb_000223_050--Hb_002085_070 Hb_007371_020 Hb_007371_020 Hb_010962_030--Hb_007371_020 Hb_021596_070 Hb_021596_070 Hb_010962_030--Hb_021596_070 Hb_000146_110 Hb_000146_110 Hb_010962_030--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_010962_030--Hb_041290_030 Hb_000003_620 Hb_000003_620 Hb_010962_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010962_030--Hb_009778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15585 136.515 24.1596 5.69089 1.4377 1.50644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84782 1.9907 0.352839 48.7891 6.67334

CAGE analysis