Hb_012018_020

Information

Type -
Description -
Location Contig12018: 14035-15960
Sequence    

Annotation

kegg
ID egr:104424044
description proline-rich receptor-like protein kinase PERK15
nr
ID XP_010034739.1
description PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID U7E011
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0275s002102g PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06254: 14350-14511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012018_020 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
2 Hb_002085_070 0.0989508566 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000002_100 0.1082609079 - - phosphate transporter [Manihot esculenta]
4 Hb_001514_100 0.1087141607 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
5 Hb_000265_020 0.1151214758 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
6 Hb_006970_150 0.1308562648 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
7 Hb_033045_010 0.1383583064 - - copine, putative [Ricinus communis]
8 Hb_000521_290 0.1422836503 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
9 Hb_000417_030 0.1424101024 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
10 Hb_157980_010 0.1433532421 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_004459_110 0.1448484403 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
12 Hb_000395_030 0.1510102479 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_000996_200 0.1518269604 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
14 Hb_000177_130 0.1530931152 - - wall-associated kinase, putative [Ricinus communis]
15 Hb_003529_230 0.157083743 transcription factor TF Family: ERF -
16 Hb_000223_050 0.1618577212 - - PREDICTED: endochitinase A-like [Jatropha curcas]
17 Hb_001021_110 0.1622720305 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
18 Hb_000075_110 0.164013983 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_000512_080 0.1644106231 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000836_560 0.1652064155 - - -

Gene co-expression network

sample Hb_012018_020 Hb_012018_020 Hb_002085_070 Hb_002085_070 Hb_012018_020--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_012018_020--Hb_000002_100 Hb_001514_100 Hb_001514_100 Hb_012018_020--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_012018_020--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_012018_020--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_012018_020--Hb_033045_010 Hb_002085_070--Hb_001514_100 Hb_000521_290 Hb_000521_290 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_002085_070--Hb_000265_020 Hb_000002_100--Hb_000521_290 Hb_000002_100--Hb_001514_100 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_001514_100--Hb_000521_290 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060 Hb_000265_020--Hb_033045_010 Hb_000489_020 Hb_000489_020 Hb_000265_020--Hb_000489_020 Hb_000265_020--Hb_006970_150 Hb_000265_020--Hb_000521_290 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_033045_010--Hb_000489_020 Hb_003337_050 Hb_003337_050 Hb_033045_010--Hb_003337_050 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0267331 1.57827 0.560863 0.108269 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.603654 0.157889

CAGE analysis