Hb_001227_020

Information

Type -
Description -
Location Contig1227: 37307-39523
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_020 0.0 - - -
2 Hb_001283_010 0.1357318896 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
3 Hb_000077_460 0.1391990819 - - -
4 Hb_000365_290 0.1405776314 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
5 Hb_002762_070 0.1446437549 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
6 Hb_028207_030 0.1473831308 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
7 Hb_003556_060 0.1490699755 - - -
8 Hb_004341_010 0.1554641349 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_001021_140 0.1563716948 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_003938_010 0.1565317263 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
11 Hb_031954_010 0.1565348166 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001318_290 0.1574834646 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000935_070 0.1631234963 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_017866_020 0.16524624 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
15 Hb_005663_050 0.1676022351 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000045_180 0.1715319269 - - aquaporin PIP1 [Hevea brasiliensis]
17 Hb_027445_080 0.1734787955 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
18 Hb_013914_020 0.173937037 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_007850_040 0.1745705072 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002003_020 0.1748227073 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001227_020 Hb_001227_020 Hb_001283_010 Hb_001283_010 Hb_001227_020--Hb_001283_010 Hb_000077_460 Hb_000077_460 Hb_001227_020--Hb_000077_460 Hb_000365_290 Hb_000365_290 Hb_001227_020--Hb_000365_290 Hb_002762_070 Hb_002762_070 Hb_001227_020--Hb_002762_070 Hb_028207_030 Hb_028207_030 Hb_001227_020--Hb_028207_030 Hb_003556_060 Hb_003556_060 Hb_001227_020--Hb_003556_060 Hb_001283_010--Hb_000077_460 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_017866_020 Hb_017866_020 Hb_001283_010--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_001283_010--Hb_002003_020 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020 Hb_000365_290--Hb_002762_070 Hb_006395_010 Hb_006395_010 Hb_000365_290--Hb_006395_010 Hb_000365_290--Hb_001283_010 Hb_027445_080 Hb_027445_080 Hb_000365_290--Hb_027445_080 Hb_000365_290--Hb_028207_030 Hb_000365_290--Hb_000077_460 Hb_002762_070--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_002762_070--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_002762_070--Hb_004837_170 Hb_002762_070--Hb_028207_030 Hb_031862_090 Hb_031862_090 Hb_002762_070--Hb_031862_090 Hb_028207_030--Hb_031954_010 Hb_028207_030--Hb_004341_010 Hb_028207_030--Hb_031862_090 Hb_028207_030--Hb_027445_080 Hb_126077_020 Hb_126077_020 Hb_003556_060--Hb_126077_020 Hb_034342_010 Hb_034342_010 Hb_003556_060--Hb_034342_010 Hb_022998_010 Hb_022998_010 Hb_003556_060--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_003556_060--Hb_001424_080 Hb_003556_060--Hb_017866_020 Hb_003556_060--Hb_000077_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.698853 0.0427056 0.429763 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0498435 0 0.765426 0

CAGE analysis