Hb_003938_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig3938: 9386-10066
Sequence    

Annotation

kegg
ID rcu:RCOM_0463380
description Ethylene-responsive transcription factor 1B, putative
nr
ID XP_002532362.1
description Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
swissprot
ID Q8LDC8
description Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2
trembl
ID B9T293
description Ethylene-responsive transcription factor 1B, putative (Fragment) OS=Ricinus communis GN=RCOM_0463380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39423: 9340-9850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_010 0.0 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
2 Hb_000045_180 0.0947327743 - - aquaporin PIP1 [Hevea brasiliensis]
3 Hb_000856_240 0.1101283644 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_000255_020 0.1262310439 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
5 Hb_001073_060 0.128273527 - - phosphate transporter 1 [Hevea brasiliensis]
6 Hb_001838_010 0.1322526047 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
7 Hb_135811_060 0.1325083405 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_003556_060 0.1370363747 - - -
9 Hb_003439_090 0.1375355418 - - kinase, putative [Ricinus communis]
10 Hb_013914_020 0.1379706299 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_000077_460 0.1401208609 - - -
12 Hb_017866_020 0.1411516766 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
13 Hb_003430_020 0.1444522658 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
14 Hb_002007_140 0.1458759762 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
15 Hb_134017_010 0.1479679956 - - kinase, putative [Ricinus communis]
16 Hb_000152_250 0.1499743949 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
17 Hb_000407_080 0.1502347904 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
18 Hb_000676_030 0.151100553 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
19 Hb_011791_010 0.1544461234 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
20 Hb_001863_100 0.1551654016 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003938_010 Hb_003938_010 Hb_000045_180 Hb_000045_180 Hb_003938_010--Hb_000045_180 Hb_000856_240 Hb_000856_240 Hb_003938_010--Hb_000856_240 Hb_000255_020 Hb_000255_020 Hb_003938_010--Hb_000255_020 Hb_001073_060 Hb_001073_060 Hb_003938_010--Hb_001073_060 Hb_001838_010 Hb_001838_010 Hb_003938_010--Hb_001838_010 Hb_135811_060 Hb_135811_060 Hb_003938_010--Hb_135811_060 Hb_000077_460 Hb_000077_460 Hb_000045_180--Hb_000077_460 Hb_003439_090 Hb_003439_090 Hb_000045_180--Hb_003439_090 Hb_013914_020 Hb_013914_020 Hb_000045_180--Hb_013914_020 Hb_017866_020 Hb_017866_020 Hb_000045_180--Hb_017866_020 Hb_002007_140 Hb_002007_140 Hb_000045_180--Hb_002007_140 Hb_149056_010 Hb_149056_010 Hb_000856_240--Hb_149056_010 Hb_000856_240--Hb_000255_020 Hb_000521_210 Hb_000521_210 Hb_000856_240--Hb_000521_210 Hb_000856_240--Hb_001073_060 Hb_000579_220 Hb_000579_220 Hb_000856_240--Hb_000579_220 Hb_000856_240--Hb_135811_060 Hb_003439_020 Hb_003439_020 Hb_000255_020--Hb_003439_020 Hb_000255_020--Hb_001838_010 Hb_134017_010 Hb_134017_010 Hb_000255_020--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_000255_020--Hb_074312_020 Hb_009581_040 Hb_009581_040 Hb_000255_020--Hb_009581_040 Hb_002219_090 Hb_002219_090 Hb_001073_060--Hb_002219_090 Hb_011791_010 Hb_011791_010 Hb_001073_060--Hb_011791_010 Hb_000676_030 Hb_000676_030 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_001073_060--Hb_149056_010 Hb_005333_100 Hb_005333_100 Hb_001838_010--Hb_005333_100 Hb_106969_010 Hb_106969_010 Hb_001838_010--Hb_106969_010 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_000976_060 Hb_000976_060 Hb_001838_010--Hb_000976_060 Hb_017417_030 Hb_017417_030 Hb_135811_060--Hb_017417_030 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_135811_060--Hb_000045_180 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.98754 0.958506 3.33316 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.264386 0 7.00082 0.390809

CAGE analysis