Hb_001021_140

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1021: 147000-150368
Sequence    

Annotation

kegg
ID rcu:RCOM_0555270
description nucleic acid binding protein, putative
nr
ID XP_012082706.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID B9S3T6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0555270 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein indeterminate-domain 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00981: 149420-149702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_140 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_081448_010 0.0833122402 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
3 Hb_031862_090 0.0951695953 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
4 Hb_005081_080 0.1049281146 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
5 Hb_000703_320 0.114978037 - - receptor-kinase, putative [Ricinus communis]
6 Hb_000077_470 0.1150987122 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
7 Hb_004341_010 0.1151011047 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_000935_070 0.1163110939 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_031954_010 0.1216219111 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005203_010 0.1275191668 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
11 Hb_028207_030 0.12769423 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
12 Hb_000077_460 0.1325600545 - - -
13 Hb_027445_080 0.1387919399 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
14 Hb_069232_010 0.1400159071 - - PREDICTED: 60S ribosomal protein L37-3-like [Vitis vinifera]
15 Hb_002762_070 0.1415690795 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
16 Hb_135811_060 0.143353126 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_001283_010 0.1500527953 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
18 Hb_000045_180 0.1550592379 - - aquaporin PIP1 [Hevea brasiliensis]
19 Hb_001227_020 0.1563716948 - - -
20 Hb_002282_030 0.1573714054 - - -

Gene co-expression network

sample Hb_001021_140 Hb_001021_140 Hb_081448_010 Hb_081448_010 Hb_001021_140--Hb_081448_010 Hb_031862_090 Hb_031862_090 Hb_001021_140--Hb_031862_090 Hb_005081_080 Hb_005081_080 Hb_001021_140--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001021_140--Hb_000703_320 Hb_000077_470 Hb_000077_470 Hb_001021_140--Hb_000077_470 Hb_004341_010 Hb_004341_010 Hb_001021_140--Hb_004341_010 Hb_069232_010 Hb_069232_010 Hb_081448_010--Hb_069232_010 Hb_081448_010--Hb_000703_320 Hb_081448_010--Hb_005081_080 Hb_081448_010--Hb_031862_090 Hb_005203_010 Hb_005203_010 Hb_081448_010--Hb_005203_010 Hb_031862_090--Hb_005203_010 Hb_002282_030 Hb_002282_030 Hb_031862_090--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_031862_090--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_031862_090--Hb_000616_060 Hb_027445_080 Hb_027445_080 Hb_031862_090--Hb_027445_080 Hb_000575_010 Hb_000575_010 Hb_031862_090--Hb_000575_010 Hb_001487_020 Hb_001487_020 Hb_005081_080--Hb_001487_020 Hb_046117_050 Hb_046117_050 Hb_005081_080--Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_005081_080--Hb_000170_230 Hb_005081_080--Hb_069232_010 Hb_000703_320--Hb_069232_010 Hb_000431_180 Hb_000431_180 Hb_000703_320--Hb_000431_180 Hb_005380_030 Hb_005380_030 Hb_000703_320--Hb_005380_030 Hb_135811_060 Hb_135811_060 Hb_000703_320--Hb_135811_060 Hb_009083_080 Hb_009083_080 Hb_000077_470--Hb_009083_080 Hb_003253_060 Hb_003253_060 Hb_000077_470--Hb_003253_060 Hb_001157_150 Hb_001157_150 Hb_000077_470--Hb_001157_150 Hb_000077_470--Hb_005081_080 Hb_006418_010 Hb_006418_010 Hb_000077_470--Hb_006418_010 Hb_031954_010 Hb_031954_010 Hb_004341_010--Hb_031954_010 Hb_004837_170 Hb_004837_170 Hb_004341_010--Hb_004837_170 Hb_002762_070 Hb_002762_070 Hb_004341_010--Hb_002762_070 Hb_000077_460 Hb_000077_460 Hb_004341_010--Hb_000077_460 Hb_028207_030 Hb_028207_030 Hb_004341_010--Hb_028207_030 Hb_001283_010 Hb_001283_010 Hb_004341_010--Hb_001283_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.61484 0.0186045 1.75508 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0149478 0 3.36731 0

CAGE analysis