Hb_006198_140

Information

Type -
Description -
Location Contig6198: 105833-108032
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24250g
description hypothetical protein
nr
ID XP_010109719.1
description hypothetical protein L484_015208 [Morus notabilis]
swissprot
ID Q84W98
description CLAVATA3/ESR (CLE)-related protein 41 OS=Arabidopsis thaliana GN=CLE41 PE=1 SV=1
trembl
ID W9S349
description Uncharacterized protein OS=Morus notabilis GN=L484_015208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51388: 106958-107113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_140 0.0 - - hypothetical protein L484_015208 [Morus notabilis]
2 Hb_183209_010 0.1610305477 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
3 Hb_000935_070 0.1725657528 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_001227_020 0.1967173912 - - -
5 Hb_001558_070 0.1970049666 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
6 Hb_001021_140 0.2019396472 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
7 Hb_001863_100 0.2070954989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_031862_090 0.220631154 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_001318_130 0.2211807998 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
10 Hb_000165_190 0.2214739109 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
11 Hb_002326_080 0.2271921814 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
12 Hb_081448_010 0.2274936331 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
13 Hb_031954_010 0.2323824219 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004341_010 0.2330622767 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
15 Hb_000703_320 0.2347391669 - - receptor-kinase, putative [Ricinus communis]
16 Hb_000077_470 0.2357459732 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
17 Hb_028207_030 0.2374205618 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
18 Hb_005203_010 0.2382484334 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
19 Hb_004837_170 0.2387877778 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
20 Hb_005081_080 0.2399559589 - - hypothetical protein JCGZ_16787 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_140 Hb_006198_140 Hb_183209_010 Hb_183209_010 Hb_006198_140--Hb_183209_010 Hb_000935_070 Hb_000935_070 Hb_006198_140--Hb_000935_070 Hb_001227_020 Hb_001227_020 Hb_006198_140--Hb_001227_020 Hb_001558_070 Hb_001558_070 Hb_006198_140--Hb_001558_070 Hb_001021_140 Hb_001021_140 Hb_006198_140--Hb_001021_140 Hb_001863_100 Hb_001863_100 Hb_006198_140--Hb_001863_100 Hb_183209_010--Hb_000935_070 Hb_000077_470 Hb_000077_470 Hb_183209_010--Hb_000077_470 Hb_006198_150 Hb_006198_150 Hb_183209_010--Hb_006198_150 Hb_183209_010--Hb_001021_140 Hb_002019_030 Hb_002019_030 Hb_183209_010--Hb_002019_030 Hb_000935_070--Hb_001021_140 Hb_000077_460 Hb_000077_460 Hb_000935_070--Hb_000077_460 Hb_004341_010 Hb_004341_010 Hb_000935_070--Hb_004341_010 Hb_003556_060 Hb_003556_060 Hb_000935_070--Hb_003556_060 Hb_001283_010 Hb_001283_010 Hb_000935_070--Hb_001283_010 Hb_028207_030 Hb_028207_030 Hb_000935_070--Hb_028207_030 Hb_001227_020--Hb_001283_010 Hb_001227_020--Hb_000077_460 Hb_000365_290 Hb_000365_290 Hb_001227_020--Hb_000365_290 Hb_002762_070 Hb_002762_070 Hb_001227_020--Hb_002762_070 Hb_001227_020--Hb_028207_030 Hb_001227_020--Hb_003556_060 Hb_001862_170 Hb_001862_170 Hb_001558_070--Hb_001862_170 Hb_000608_020 Hb_000608_020 Hb_001558_070--Hb_000608_020 Hb_001454_360 Hb_001454_360 Hb_001558_070--Hb_001454_360 Hb_000429_110 Hb_000429_110 Hb_001558_070--Hb_000429_110 Hb_008948_060 Hb_008948_060 Hb_001558_070--Hb_008948_060 Hb_073171_010 Hb_073171_010 Hb_001558_070--Hb_073171_010 Hb_081448_010 Hb_081448_010 Hb_001021_140--Hb_081448_010 Hb_031862_090 Hb_031862_090 Hb_001021_140--Hb_031862_090 Hb_005081_080 Hb_005081_080 Hb_001021_140--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001021_140--Hb_000703_320 Hb_001021_140--Hb_000077_470 Hb_001021_140--Hb_004341_010 Hb_000333_130 Hb_000333_130 Hb_001863_100--Hb_000333_130 Hb_003938_010 Hb_003938_010 Hb_001863_100--Hb_003938_010 Hb_012055_100 Hb_012055_100 Hb_001863_100--Hb_012055_100 Hb_001863_100--Hb_005081_080 Hb_001863_100--Hb_000703_320 Hb_000260_320 Hb_000260_320 Hb_001863_100--Hb_000260_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.28007 0 0.561789 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148325 0.116514 0 1.07212 0

CAGE analysis