Hb_001862_170

Information

Type -
Description -
Location Contig1862: 208815-209414
Sequence    

Annotation

kegg
ID rcu:RCOM_1154640
description zinc finger protein, putative
nr
ID XP_002524946.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q42485
description Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
trembl
ID B9SG27
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1154640 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_170 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001558_070 0.1404904344 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
3 Hb_073171_010 0.1542039943 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
4 Hb_008948_060 0.1656212601 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001006_030 0.1659795957 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001493_170 0.1704273974 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
7 Hb_002461_070 0.1826382389 - - gibberellin 2-oxidase, putative [Ricinus communis]
8 Hb_000429_110 0.187542239 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
9 Hb_001259_100 0.1882942087 - - chloride channel-like family protein [Populus trichocarpa]
10 Hb_004044_030 0.1910596436 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
11 Hb_001318_290 0.193839342 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_136884_010 0.1940511193 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_008001_020 0.1983197129 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
14 Hb_000056_350 0.20108274 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
15 Hb_000069_520 0.2055180858 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
16 Hb_052764_080 0.2055342175 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
17 Hb_001976_120 0.2060640411 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
18 Hb_002750_010 0.2070376199 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
19 Hb_009736_010 0.2090413437 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001227_020 0.2099281818 - - -

Gene co-expression network

sample Hb_001862_170 Hb_001862_170 Hb_001558_070 Hb_001558_070 Hb_001862_170--Hb_001558_070 Hb_073171_010 Hb_073171_010 Hb_001862_170--Hb_073171_010 Hb_008948_060 Hb_008948_060 Hb_001862_170--Hb_008948_060 Hb_001006_030 Hb_001006_030 Hb_001862_170--Hb_001006_030 Hb_001493_170 Hb_001493_170 Hb_001862_170--Hb_001493_170 Hb_002461_070 Hb_002461_070 Hb_001862_170--Hb_002461_070 Hb_000608_020 Hb_000608_020 Hb_001558_070--Hb_000608_020 Hb_001454_360 Hb_001454_360 Hb_001558_070--Hb_001454_360 Hb_000429_110 Hb_000429_110 Hb_001558_070--Hb_000429_110 Hb_001558_070--Hb_008948_060 Hb_001558_070--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_073171_010--Hb_001259_100 Hb_052764_080 Hb_052764_080 Hb_073171_010--Hb_052764_080 Hb_000152_250 Hb_000152_250 Hb_073171_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_073171_010--Hb_015473_010 Hb_005183_200 Hb_005183_200 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070 Hb_000359_320 Hb_000359_320 Hb_008948_060--Hb_000359_320 Hb_008948_060--Hb_001454_360 Hb_008948_060--Hb_073171_010 Hb_002236_070 Hb_002236_070 Hb_008948_060--Hb_002236_070 Hb_006020_010 Hb_006020_010 Hb_008948_060--Hb_006020_010 Hb_000069_520 Hb_000069_520 Hb_001006_030--Hb_000069_520 Hb_002374_060 Hb_002374_060 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_003266_060 Hb_003266_060 Hb_001006_030--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001006_030--Hb_002289_110 Hb_000676_170 Hb_000676_170 Hb_001006_030--Hb_000676_170 Hb_001493_170--Hb_003967_010 Hb_028008_030 Hb_028008_030 Hb_001493_170--Hb_028008_030 Hb_000761_030 Hb_000761_030 Hb_001493_170--Hb_000761_030 Hb_000230_160 Hb_000230_160 Hb_001493_170--Hb_000230_160 Hb_008001_020 Hb_008001_020 Hb_001493_170--Hb_008001_020 Hb_000081_030 Hb_000081_030 Hb_001493_170--Hb_000081_030 Hb_010162_010 Hb_010162_010 Hb_002461_070--Hb_010162_010 Hb_156696_010 Hb_156696_010 Hb_002461_070--Hb_156696_010 Hb_002461_070--Hb_001006_030 Hb_002461_070--Hb_008001_020 Hb_001821_030 Hb_001821_030 Hb_002461_070--Hb_001821_030 Hb_002461_070--Hb_002374_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.6051 0.200762 4.4255 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201951 0.555506 0.138795 3.84024 0.307153

CAGE analysis