Hb_000359_320

Information

Type transcription factor
Description TF Family: HSF
Location Contig359: 315875-322167
Sequence    

Annotation

kegg
ID rcu:RCOM_0539820
description Heat shock factor protein, putative
nr
ID XP_012070195.1
description PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
swissprot
ID Q94J16
description Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1
trembl
ID A0A067L5N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03936 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_320 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
2 Hb_008948_060 0.1328662114 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001318_290 0.1720629727 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_001227_020 0.1761130666 - - -
5 Hb_002236_070 0.1808229146 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
6 Hb_003938_010 0.2040247834 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
7 Hb_008695_130 0.2099026844 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004635_040 0.2119951922 - - Polyprotein, putative [Solanum demissum]
9 Hb_001454_360 0.2141817102 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
10 Hb_010614_020 0.214730777 - - BnaC05g27570D [Brassica napus]
11 Hb_009775_040 0.2202424343 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
12 Hb_003556_060 0.2235300809 - - -
13 Hb_001558_070 0.2300371314 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
14 Hb_006020_010 0.230588273 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
15 Hb_007403_010 0.2311129987 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
16 Hb_000365_290 0.2348510397 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
17 Hb_034342_010 0.2366924928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_036356_010 0.2367435452 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_002217_210 0.2373164201 - - -
20 Hb_001863_100 0.2386531581 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000359_320 Hb_000359_320 Hb_008948_060 Hb_008948_060 Hb_000359_320--Hb_008948_060 Hb_001318_290 Hb_001318_290 Hb_000359_320--Hb_001318_290 Hb_001227_020 Hb_001227_020 Hb_000359_320--Hb_001227_020 Hb_002236_070 Hb_002236_070 Hb_000359_320--Hb_002236_070 Hb_003938_010 Hb_003938_010 Hb_000359_320--Hb_003938_010 Hb_008695_130 Hb_008695_130 Hb_000359_320--Hb_008695_130 Hb_001454_360 Hb_001454_360 Hb_008948_060--Hb_001454_360 Hb_073171_010 Hb_073171_010 Hb_008948_060--Hb_073171_010 Hb_008948_060--Hb_002236_070 Hb_006020_010 Hb_006020_010 Hb_008948_060--Hb_006020_010 Hb_001862_170 Hb_001862_170 Hb_008948_060--Hb_001862_170 Hb_001318_290--Hb_001227_020 Hb_001558_070 Hb_001558_070 Hb_001318_290--Hb_001558_070 Hb_001318_290--Hb_008948_060 Hb_001318_290--Hb_001862_170 Hb_009736_010 Hb_009736_010 Hb_001318_290--Hb_009736_010 Hb_001283_010 Hb_001283_010 Hb_001227_020--Hb_001283_010 Hb_000077_460 Hb_000077_460 Hb_001227_020--Hb_000077_460 Hb_000365_290 Hb_000365_290 Hb_001227_020--Hb_000365_290 Hb_002762_070 Hb_002762_070 Hb_001227_020--Hb_002762_070 Hb_028207_030 Hb_028207_030 Hb_001227_020--Hb_028207_030 Hb_003556_060 Hb_003556_060 Hb_001227_020--Hb_003556_060 Hb_000407_080 Hb_000407_080 Hb_002236_070--Hb_000407_080 Hb_002236_070--Hb_006020_010 Hb_004635_040 Hb_004635_040 Hb_002236_070--Hb_004635_040 Hb_004452_080 Hb_004452_080 Hb_002236_070--Hb_004452_080 Hb_001922_020 Hb_001922_020 Hb_002236_070--Hb_001922_020 Hb_013914_020 Hb_013914_020 Hb_002236_070--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_003938_010--Hb_000045_180 Hb_000856_240 Hb_000856_240 Hb_003938_010--Hb_000856_240 Hb_000255_020 Hb_000255_020 Hb_003938_010--Hb_000255_020 Hb_001073_060 Hb_001073_060 Hb_003938_010--Hb_001073_060 Hb_001838_010 Hb_001838_010 Hb_003938_010--Hb_001838_010 Hb_135811_060 Hb_135811_060 Hb_003938_010--Hb_135811_060 Hb_001221_480 Hb_001221_480 Hb_008695_130--Hb_001221_480 Hb_002750_010 Hb_002750_010 Hb_008695_130--Hb_002750_010 Hb_003987_030 Hb_003987_030 Hb_008695_130--Hb_003987_030 Hb_001454_410 Hb_001454_410 Hb_008695_130--Hb_001454_410 Hb_003807_020 Hb_003807_020 Hb_008695_130--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_008695_130--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.115155 0.0309394 0.0693824 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0239621 0 0.0956189 0

CAGE analysis