Hb_001318_290

Information

Type transcription factor
Description TF Family: MYB
Location Contig1318: 240286-241548
Sequence    

Annotation

kegg
ID rcu:RCOM_1345780
description r2r3-myb transcription factor, putative
nr
ID XP_002515235.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID B9RN96
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1345780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_290 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_001227_020 0.1574834646 - - -
3 Hb_000359_320 0.1720629727 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
4 Hb_001558_070 0.1758884976 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
5 Hb_008948_060 0.1857628854 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001862_170 0.193839342 - - zinc finger protein, putative [Ricinus communis]
7 Hb_009736_010 0.1947503947 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002750_010 0.2018799656 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
9 Hb_001493_170 0.2088533713 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
10 Hb_032631_050 0.2182478981 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
11 Hb_005663_050 0.2248098857 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001006_030 0.2276618538 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000365_290 0.2284305064 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
14 Hb_001454_410 0.2293294997 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
15 Hb_001283_010 0.2304451469 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
16 Hb_002236_070 0.2308685244 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
17 Hb_008695_130 0.2312879707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_055305_010 0.2320646398 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_000762_070 0.2324320117 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
20 Hb_000165_190 0.2378702702 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_001318_290 Hb_001318_290 Hb_001227_020 Hb_001227_020 Hb_001318_290--Hb_001227_020 Hb_000359_320 Hb_000359_320 Hb_001318_290--Hb_000359_320 Hb_001558_070 Hb_001558_070 Hb_001318_290--Hb_001558_070 Hb_008948_060 Hb_008948_060 Hb_001318_290--Hb_008948_060 Hb_001862_170 Hb_001862_170 Hb_001318_290--Hb_001862_170 Hb_009736_010 Hb_009736_010 Hb_001318_290--Hb_009736_010 Hb_001283_010 Hb_001283_010 Hb_001227_020--Hb_001283_010 Hb_000077_460 Hb_000077_460 Hb_001227_020--Hb_000077_460 Hb_000365_290 Hb_000365_290 Hb_001227_020--Hb_000365_290 Hb_002762_070 Hb_002762_070 Hb_001227_020--Hb_002762_070 Hb_028207_030 Hb_028207_030 Hb_001227_020--Hb_028207_030 Hb_003556_060 Hb_003556_060 Hb_001227_020--Hb_003556_060 Hb_000359_320--Hb_008948_060 Hb_000359_320--Hb_001227_020 Hb_002236_070 Hb_002236_070 Hb_000359_320--Hb_002236_070 Hb_003938_010 Hb_003938_010 Hb_000359_320--Hb_003938_010 Hb_008695_130 Hb_008695_130 Hb_000359_320--Hb_008695_130 Hb_001558_070--Hb_001862_170 Hb_000608_020 Hb_000608_020 Hb_001558_070--Hb_000608_020 Hb_001454_360 Hb_001454_360 Hb_001558_070--Hb_001454_360 Hb_000429_110 Hb_000429_110 Hb_001558_070--Hb_000429_110 Hb_001558_070--Hb_008948_060 Hb_073171_010 Hb_073171_010 Hb_001558_070--Hb_073171_010 Hb_008948_060--Hb_001454_360 Hb_008948_060--Hb_073171_010 Hb_008948_060--Hb_002236_070 Hb_006020_010 Hb_006020_010 Hb_008948_060--Hb_006020_010 Hb_008948_060--Hb_001862_170 Hb_001862_170--Hb_073171_010 Hb_001006_030 Hb_001006_030 Hb_001862_170--Hb_001006_030 Hb_001493_170 Hb_001493_170 Hb_001862_170--Hb_001493_170 Hb_002461_070 Hb_002461_070 Hb_001862_170--Hb_002461_070 Hb_009545_020 Hb_009545_020 Hb_009736_010--Hb_009545_020 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_031527_060 Hb_031527_060 Hb_009736_010--Hb_031527_060 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_124315_030 Hb_124315_030 Hb_009736_010--Hb_124315_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.091559 5.16194 0.63437 4.41332 0 0.0429867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0558975 1.53859 0.16095 7.59921 0

CAGE analysis