Hb_001170_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig1170: 5914-8178
Sequence    

Annotation

kegg
ID rcu:RCOM_0865060
description transcription factor, putative
nr
ID XP_002519841.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID B9S1H6
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0865060 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein ataf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05277: 6033-6163 , PASA_asmbl_05278: 6563-7184 , PASA_asmbl_05279: 7371-7829 , PASA_asmbl_05280: 7982-8262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001170_010 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_009736_010 0.1693347453 - - conserved hypothetical protein [Ricinus communis]
3 Hb_032225_030 0.1726248333 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
4 Hb_000110_380 0.1861788819 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
5 Hb_004195_090 0.1958336601 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
6 Hb_029921_030 0.2034032621 - - conserved hypothetical protein [Ricinus communis]
7 Hb_030982_060 0.2064014656 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028001_020 0.2148281469 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
9 Hb_001341_200 0.2179320695 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
10 Hb_004724_450 0.2195069513 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
11 Hb_005813_010 0.2216212387 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_029510_100 0.2238124532 - - scab resistance family protein [Populus trichocarpa]
13 Hb_006922_090 0.2243901359 - - PREDICTED: interaptin [Jatropha curcas]
14 Hb_000059_300 0.2246917857 - - caspase, putative [Ricinus communis]
15 Hb_001014_190 0.2258933533 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
16 Hb_001439_110 0.2283275242 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
17 Hb_042509_020 0.2289172588 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
18 Hb_000120_230 0.2290343852 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
19 Hb_005779_030 0.2332564908 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
20 Hb_004899_310 0.2352243822 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001170_010 Hb_001170_010 Hb_009736_010 Hb_009736_010 Hb_001170_010--Hb_009736_010 Hb_032225_030 Hb_032225_030 Hb_001170_010--Hb_032225_030 Hb_000110_380 Hb_000110_380 Hb_001170_010--Hb_000110_380 Hb_004195_090 Hb_004195_090 Hb_001170_010--Hb_004195_090 Hb_029921_030 Hb_029921_030 Hb_001170_010--Hb_029921_030 Hb_030982_060 Hb_030982_060 Hb_001170_010--Hb_030982_060 Hb_009545_020 Hb_009545_020 Hb_009736_010--Hb_009545_020 Hb_009736_010--Hb_004195_090 Hb_031527_060 Hb_031527_060 Hb_009736_010--Hb_031527_060 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_124315_030 Hb_124315_030 Hb_009736_010--Hb_124315_030 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001369_140 Hb_001369_140 Hb_032225_030--Hb_001369_140 Hb_032225_030--Hb_000110_380 Hb_032225_030--Hb_030982_060 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070 Hb_001341_200 Hb_001341_200 Hb_004195_090--Hb_001341_200 Hb_029584_090 Hb_029584_090 Hb_004195_090--Hb_029584_090 Hb_030944_010 Hb_030944_010 Hb_004195_090--Hb_030944_010 Hb_000059_300 Hb_000059_300 Hb_004195_090--Hb_000059_300 Hb_032631_050 Hb_032631_050 Hb_004195_090--Hb_032631_050 Hb_011633_040 Hb_011633_040 Hb_029921_030--Hb_011633_040 Hb_002471_260 Hb_002471_260 Hb_029921_030--Hb_002471_260 Hb_003972_060 Hb_003972_060 Hb_029921_030--Hb_003972_060 Hb_001776_190 Hb_001776_190 Hb_029921_030--Hb_001776_190 Hb_000421_270 Hb_000421_270 Hb_029921_030--Hb_000421_270 Hb_006538_190 Hb_006538_190 Hb_029921_030--Hb_006538_190 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_001439_110 Hb_001439_110 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_000189_590 Hb_000189_590 Hb_030982_060--Hb_000189_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.929833 3.27549 0.674816 7.82401 0.083361 0.12939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.533492 2.09878 1.8058 7.55768 0.523159

CAGE analysis