Hb_011947_020

Information

Type -
Description -
Location Contig11947: 2429-4062
Sequence    

Annotation

kegg
ID rcu:RCOM_0934290
description hypothetical protein
nr
ID XP_012081133.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16986 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011947_020 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000189_590 0.1490327476 - - PREDICTED: cysteine synthase [Jatropha curcas]
3 Hb_030982_060 0.150740893 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000824_050 0.1682246047 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
5 Hb_023827_020 0.187326691 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
6 Hb_032225_030 0.198186318 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
7 Hb_004330_080 0.1995743953 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
8 Hb_001486_350 0.2025075202 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_166053_010 0.2029649734 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
10 Hb_002151_060 0.2089511999 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
11 Hb_001014_190 0.2092091735 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
12 Hb_028872_150 0.2098051596 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
13 Hb_001673_100 0.2104294207 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
14 Hb_029510_100 0.2129658892 - - scab resistance family protein [Populus trichocarpa]
15 Hb_002471_260 0.2142222066 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
16 Hb_001148_090 0.2199459441 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
17 Hb_001439_110 0.2212958628 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
18 Hb_006922_090 0.2250107166 - - PREDICTED: interaptin [Jatropha curcas]
19 Hb_000811_080 0.225575476 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002539_010 0.2256240245 - - hypothetical protein JCGZ_15711 [Jatropha curcas]

Gene co-expression network

sample Hb_011947_020 Hb_011947_020 Hb_000189_590 Hb_000189_590 Hb_011947_020--Hb_000189_590 Hb_030982_060 Hb_030982_060 Hb_011947_020--Hb_030982_060 Hb_000824_050 Hb_000824_050 Hb_011947_020--Hb_000824_050 Hb_023827_020 Hb_023827_020 Hb_011947_020--Hb_023827_020 Hb_032225_030 Hb_032225_030 Hb_011947_020--Hb_032225_030 Hb_004330_080 Hb_004330_080 Hb_011947_020--Hb_004330_080 Hb_002539_020 Hb_002539_020 Hb_000189_590--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_000189_590--Hb_002539_010 Hb_000189_590--Hb_030982_060 Hb_001439_110 Hb_001439_110 Hb_000189_590--Hb_001439_110 Hb_002835_350 Hb_002835_350 Hb_000189_590--Hb_002835_350 Hb_030982_060--Hb_032225_030 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_135757_020 Hb_135757_020 Hb_000824_050--Hb_135757_020 Hb_006922_090 Hb_006922_090 Hb_000824_050--Hb_006922_090 Hb_000824_050--Hb_023827_020 Hb_000679_190 Hb_000679_190 Hb_000824_050--Hb_000679_190 Hb_004094_020 Hb_004094_020 Hb_000824_050--Hb_004094_020 Hb_001946_310 Hb_001946_310 Hb_000824_050--Hb_001946_310 Hb_000381_110 Hb_000381_110 Hb_023827_020--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_023827_020--Hb_100147_010 Hb_001673_100 Hb_001673_100 Hb_023827_020--Hb_001673_100 Hb_005914_140 Hb_005914_140 Hb_023827_020--Hb_005914_140 Hb_003044_080 Hb_003044_080 Hb_023827_020--Hb_003044_080 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001369_140 Hb_001369_140 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_004330_080--Hb_135757_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187664 0.337083 0.0983531 2.6902 0.116621 0.0964387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.479886 0.452609 0.39776 2.68607 0.880612

CAGE analysis