Hb_002539_010

Information

Type -
Description -
Location Contig2539: 2731-6738
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16590g
description POPTRDRAFT_1091272; calcineurin-like phosphoesterase family protein
nr
ID KDP41304.1
description hypothetical protein JCGZ_15711 [Jatropha curcas]
swissprot
ID Q9LMX4
description Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=2 SV=1
trembl
ID A0A067LB35
description Purple acid phosphatase OS=Jatropha curcas GN=JCGZ_15711 PE=3 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26504: 2649-19378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_010 0.0 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
2 Hb_011633_040 0.1077670592 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
3 Hb_002539_020 0.1235625566 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
4 Hb_000337_010 0.1308545753 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
5 Hb_000625_030 0.1380430727 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
6 Hb_001500_070 0.1427830503 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008226_070 0.1444108196 - - PREDICTED: expansin-A8 [Jatropha curcas]
8 Hb_005181_180 0.1511606456 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012545_090 0.1553051365 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
10 Hb_000702_060 0.1578642865 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003813_120 0.1607792086 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000094_370 0.1627034913 - - -
13 Hb_007423_020 0.1630627328 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
14 Hb_012325_010 0.1650171839 - - hypothetical protein RCOM_0068670 [Ricinus communis]
15 Hb_000172_280 0.1650696312 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_027380_190 0.1662842292 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
17 Hb_001414_020 0.1677437601 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
18 Hb_004041_100 0.16840832 - - -
19 Hb_006846_120 0.16863259 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_002835_350 0.1690728408 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]

Gene co-expression network

sample Hb_002539_010 Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_002539_020 Hb_002539_020 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_029921_030 Hb_029921_030 Hb_011633_040--Hb_029921_030 Hb_027380_190 Hb_027380_190 Hb_011633_040--Hb_027380_190 Hb_152868_030 Hb_152868_030 Hb_011633_040--Hb_152868_030 Hb_012545_090 Hb_012545_090 Hb_011633_040--Hb_012545_090 Hb_001140_360 Hb_001140_360 Hb_011633_040--Hb_001140_360 Hb_006846_120 Hb_006846_120 Hb_002539_020--Hb_006846_120 Hb_002539_020--Hb_008226_070 Hb_007423_020 Hb_007423_020 Hb_002539_020--Hb_007423_020 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_000702_060 Hb_000702_060 Hb_000337_010--Hb_000702_060 Hb_002026_070 Hb_002026_070 Hb_000337_010--Hb_002026_070 Hb_009535_030 Hb_009535_030 Hb_000337_010--Hb_009535_030 Hb_053575_020 Hb_053575_020 Hb_000337_010--Hb_053575_020 Hb_001235_130 Hb_001235_130 Hb_000337_010--Hb_001235_130 Hb_012325_010 Hb_012325_010 Hb_000337_010--Hb_012325_010 Hb_008749_020 Hb_008749_020 Hb_000625_030--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_000625_030--Hb_004041_100 Hb_000181_020 Hb_000181_020 Hb_000625_030--Hb_000181_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_000347_110 Hb_000347_110 Hb_001500_070--Hb_000347_110 Hb_001500_070--Hb_012325_010 Hb_000159_120 Hb_000159_120 Hb_008226_070--Hb_000159_120 Hb_012022_080 Hb_012022_080 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_003226_120 Hb_003226_120 Hb_008226_070--Hb_003226_120 Hb_000190_090 Hb_000190_090 Hb_008226_070--Hb_000190_090 Hb_001221_020 Hb_001221_020 Hb_008226_070--Hb_001221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.887547 3.42111 4.08645 8.54708 0.705924 1.59154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89535 4.04688 1.24777 16.833 5.17493

CAGE analysis