Hb_000347_110

Information

Type -
Description -
Location Contig347: 115245-128297
Sequence    

Annotation

kegg
ID rcu:RCOM_0684810
description (S)-2-hydroxy-acid oxidase, putative (EC:1.1.3.15)
nr
ID CDX97546.1
description BnaA05g25330D [Brassica napus]
swissprot
ID Q9LJH5
description Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1
trembl
ID A0A078E8P8
description BnaA05g25330D protein OS=Brassica napus GN=BnaA05g25330D PE=4 SV=1
Gene Ontology
ID GO:0010181
description peroxisomal -2-hydroxy-acid oxidase glo4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36183: 115270-116390 , PASA_asmbl_36184: 117347-117640 , PASA_asmbl_36186: 119807-120541 , PASA_asmbl_36187: 120568-128347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_110 0.0 - - BnaA05g25330D [Brassica napus]
2 Hb_003813_120 0.0951156154 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000173_260 0.0971328917 - - hypothetical protein L484_010046 [Morus notabilis]
4 Hb_004041_100 0.1031217331 - - -
5 Hb_011360_060 0.1086355848 - - glycogen phosphorylase, putative [Ricinus communis]
6 Hb_000181_020 0.1119438343 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
7 Hb_003626_040 0.111991104 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
8 Hb_000702_060 0.1180395838 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001500_070 0.1255462366 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002272_230 0.1354662663 - - sodium/hydrogen exchanger, putative [Ricinus communis]
11 Hb_000041_060 0.1361027916 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000227_040 0.1363059618 - - Stem-specific protein TSJT1, putative [Ricinus communis]
13 Hb_000227_330 0.1364346706 - - Acyl-CoA synthetase [Ricinus communis]
14 Hb_004631_080 0.1419101117 - - P3B-ATPase PH1 [Petunia x hybrida]
15 Hb_000684_360 0.1449944073 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
16 Hb_004129_050 0.1459548222 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
17 Hb_003626_050 0.1476683682 - - malic enzyme, putative [Ricinus communis]
18 Hb_000823_010 0.1480931118 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
19 Hb_006717_070 0.1485649058 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
20 Hb_009732_020 0.1498963393 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_000347_110 Hb_000347_110 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_004041_100 Hb_004041_100 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_003813_120--Hb_003626_040 Hb_006717_070 Hb_006717_070 Hb_003813_120--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_003813_120--Hb_000227_040 Hb_000702_060 Hb_000702_060 Hb_003813_120--Hb_000702_060 Hb_001500_070 Hb_001500_070 Hb_003813_120--Hb_001500_070 Hb_000173_260--Hb_011360_060 Hb_000173_260--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000173_260--Hb_000181_020 Hb_004041_100--Hb_000625_030 Hb_004041_100--Hb_000181_020 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_004041_100--Hb_001500_070 Hb_011360_060--Hb_000181_020 Hb_002026_070 Hb_002026_070 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_011360_060--Hb_000625_030 Hb_000181_020--Hb_000625_030 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_000181_020--Hb_001500_070 Hb_003626_040--Hb_006717_070 Hb_003626_040--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_003626_040--Hb_000684_360 Hb_003626_040--Hb_001500_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32037 7.54604 5.91054 5.32081 2.04201 2.28171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09254 1.63159 1.36772 24.3657 7.46522

CAGE analysis