Hb_000173_260

Information

Type -
Description -
Location Contig173: 213961-226883
Sequence    

Annotation

kegg
ID rcu:RCOM_0678170
description endo-1,3-1,4-beta-d-glucanase, putative
nr
ID XP_010103444.1
description hypothetical protein L484_010046 [Morus notabilis]
swissprot
ID Q9ZT66
description Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1
trembl
ID A0A0E0HE50
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0016787
description endo- -beta-d-glucanase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16444: 212318-214118 , PASA_asmbl_16445: 212349-213961 , PASA_asmbl_16446: 215944-217344 , PASA_asmbl_16447: 217401-218322 , PASA_asmbl_16448: 223146-226823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_260 0.0 - - hypothetical protein L484_010046 [Morus notabilis]
2 Hb_000347_110 0.0971328917 - - BnaA05g25330D [Brassica napus]
3 Hb_011360_060 0.1035586403 - - glycogen phosphorylase, putative [Ricinus communis]
4 Hb_004041_100 0.108231052 - - -
5 Hb_000625_030 0.1338304725 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
6 Hb_002272_230 0.1402088678 - - sodium/hydrogen exchanger, putative [Ricinus communis]
7 Hb_000181_020 0.1405780246 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
8 Hb_008749_020 0.1417205852 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001500_070 0.1429126094 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000041_060 0.1462072304 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_004631_080 0.1563424705 - - P3B-ATPase PH1 [Petunia x hybrida]
12 Hb_000227_330 0.163187202 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_002235_050 0.1655958975 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
14 Hb_003813_120 0.1665924568 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000702_060 0.1692529669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004129_050 0.1707880584 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
17 Hb_003626_050 0.1719511233 - - malic enzyme, putative [Ricinus communis]
18 Hb_000337_010 0.1721756857 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
19 Hb_012545_090 0.1740300814 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
20 Hb_002301_250 0.1748251573 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]

Gene co-expression network

sample Hb_000173_260 Hb_000173_260 Hb_000347_110 Hb_000347_110 Hb_000173_260--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000173_260--Hb_011360_060 Hb_004041_100 Hb_004041_100 Hb_000173_260--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000181_020 Hb_000181_020 Hb_000173_260--Hb_000181_020 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_004041_100 Hb_000347_110--Hb_011360_060 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_011360_060--Hb_000181_020 Hb_002026_070 Hb_002026_070 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_011360_060--Hb_000625_030 Hb_004041_100--Hb_000625_030 Hb_004041_100--Hb_000181_020 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_001500_070 Hb_001500_070 Hb_004041_100--Hb_001500_070 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_000181_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_004631_080 Hb_004631_080 Hb_002272_230--Hb_004631_080 Hb_002272_230--Hb_004041_100 Hb_025526_080 Hb_025526_080 Hb_002272_230--Hb_025526_080 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_000181_020--Hb_001500_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44522 12.5885 19.8552 11.3674 2.3724 3.9661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85823 2.03266 3.79016 50.4551 18.464

CAGE analysis