Hb_002200_060

Information

Type -
Description -
Location Contig2200: 58569-60456
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07190g
description POPTRDRAFT_798641; glycolipid transfer family protein
nr
ID XP_012066066.1
description PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
swissprot
ID Q6NLQ3
description Glycolipid transfer protein 2 OS=Arabidopsis thaliana GN=GLTP2 PE=2 SV=1
trembl
ID A0A067LFX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25220 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pleckstrin homology domain-containing family a member 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22678: 58595-60519
cDNA
(Sanger)
(ID:Location)		 019_I12.ab1: 58595-59749

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_060 0.0 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
2 Hb_000521_360 0.1325152718 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
3 Hb_000473_070 0.1335498406 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
4 Hb_002272_230 0.1369301048 - - sodium/hydrogen exchanger, putative [Ricinus communis]
5 Hb_000265_080 0.1384586643 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
6 Hb_006788_150 0.1385797892 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004800_220 0.1445577717 - - PREDICTED: random slug protein 5 [Jatropha curcas]
8 Hb_005010_040 0.1446616214 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
9 Hb_001024_030 0.1467359917 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
10 Hb_031042_030 0.1516791449 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
11 Hb_009812_010 0.1529040664 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001014_150 0.1535363992 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000661_230 0.1550405262 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
14 Hb_000412_060 0.1554590822 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
15 Hb_005116_010 0.1585982158 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_002542_090 0.1591907794 - - Potassium transporter, putative [Ricinus communis]
17 Hb_002960_010 0.1593672633 - - Zeamatin precursor, putative [Ricinus communis]
18 Hb_002928_220 0.1606613994 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_009486_100 0.1609753936 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003842_010 0.1617016111 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002200_060 Hb_002200_060 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_000473_070 Hb_000473_070 Hb_002200_060--Hb_000473_070 Hb_002272_230 Hb_002272_230 Hb_002200_060--Hb_002272_230 Hb_000265_080 Hb_000265_080 Hb_002200_060--Hb_000265_080 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_004800_220 Hb_004800_220 Hb_002200_060--Hb_004800_220 Hb_001345_010 Hb_001345_010 Hb_000521_360--Hb_001345_010 Hb_107809_010 Hb_107809_010 Hb_000521_360--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_000521_360--Hb_005542_040 Hb_001565_010 Hb_001565_010 Hb_000521_360--Hb_001565_010 Hb_005276_220 Hb_005276_220 Hb_000521_360--Hb_005276_220 Hb_007676_040 Hb_007676_040 Hb_000521_360--Hb_007676_040 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_009296_060 Hb_009296_060 Hb_000473_070--Hb_009296_060 Hb_000699_050 Hb_000699_050 Hb_000473_070--Hb_000699_050 Hb_000473_070--Hb_001345_010 Hb_004631_080 Hb_004631_080 Hb_002272_230--Hb_004631_080 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_025526_080 Hb_025526_080 Hb_002272_230--Hb_025526_080 Hb_000347_110 Hb_000347_110 Hb_002272_230--Hb_000347_110 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_000265_080--Hb_004800_220 Hb_000265_080--Hb_009296_060 Hb_002960_010 Hb_002960_010 Hb_000265_080--Hb_002960_010 Hb_006538_010 Hb_006538_010 Hb_000265_080--Hb_006538_010 Hb_000453_130 Hb_000453_130 Hb_000265_080--Hb_000453_130 Hb_025526_010 Hb_025526_010 Hb_006788_150--Hb_025526_010 Hb_005116_010 Hb_005116_010 Hb_006788_150--Hb_005116_010 Hb_000661_230 Hb_000661_230 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_008145_010 Hb_008145_010 Hb_004800_220--Hb_008145_010 Hb_008097_020 Hb_008097_020 Hb_004800_220--Hb_008097_020 Hb_004800_220--Hb_025526_080 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127381 4.2161 4.60905 1.44645 0.111556 0.281727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159165 0.375534 0.153224 16.7113 4.34167

CAGE analysis