Hb_000412_060

Information

Type -
Description -
Location Contig412: 161151-161984
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00830g
description POPTRDRAFT_763717; hypothetical protein
nr
ID KDP29652.1
description hypothetical protein JCGZ_18814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18814 PE=4 SV=1
Gene Ontology
ID GO:0016772
description l-type lectin-domain containing receptor kinase -like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40798: 143021-161235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_060 0.0 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
2 Hb_006788_150 0.1172573684 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018591_050 0.1345574509 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
4 Hb_025526_010 0.1435785899 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
5 Hb_007894_260 0.1501999696 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_005116_010 0.1510527501 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
7 Hb_000077_330 0.1518417951 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
8 Hb_004884_200 0.1538992528 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
9 Hb_002200_060 0.1554590822 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
10 Hb_008692_010 0.1565835562 - - putative polyol transported protein 2 [Hevea brasiliensis]
11 Hb_005010_040 0.1567063425 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
12 Hb_006938_010 0.1571658458 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_031042_030 0.1612476549 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
14 Hb_009627_040 0.1612594356 - - Lipase class 3-related protein, putative [Theobroma cacao]
15 Hb_001649_040 0.1618537108 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_000010_200 0.1626242315 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_014037_010 0.1632124593 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
18 Hb_000230_230 0.1634870689 - - hydrolase, putative [Ricinus communis]
19 Hb_006569_110 0.1637540691 - - conserved hypothetical protein [Ricinus communis]
20 Hb_056101_010 0.1647944773 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_000412_060 Hb_000412_060 Hb_006788_150 Hb_006788_150 Hb_000412_060--Hb_006788_150 Hb_018591_050 Hb_018591_050 Hb_000412_060--Hb_018591_050 Hb_025526_010 Hb_025526_010 Hb_000412_060--Hb_025526_010 Hb_007894_260 Hb_007894_260 Hb_000412_060--Hb_007894_260 Hb_005116_010 Hb_005116_010 Hb_000412_060--Hb_005116_010 Hb_000077_330 Hb_000077_330 Hb_000412_060--Hb_000077_330 Hb_006788_150--Hb_025526_010 Hb_006788_150--Hb_005116_010 Hb_000661_230 Hb_000661_230 Hb_006788_150--Hb_000661_230 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_018591_050--Hb_000077_330 Hb_008692_010 Hb_008692_010 Hb_018591_050--Hb_008692_010 Hb_018591_050--Hb_025526_010 Hb_018591_050--Hb_007894_260 Hb_003060_080 Hb_003060_080 Hb_018591_050--Hb_003060_080 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_025526_010--Hb_000661_230 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_025526_010--Hb_003060_080 Hb_006569_110 Hb_006569_110 Hb_007894_260--Hb_006569_110 Hb_006938_010 Hb_006938_010 Hb_007894_260--Hb_006938_010 Hb_007894_260--Hb_003060_080 Hb_000010_200 Hb_000010_200 Hb_007894_260--Hb_000010_200 Hb_000381_030 Hb_000381_030 Hb_007894_260--Hb_000381_030 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_032050_050 Hb_032050_050 Hb_000077_330--Hb_032050_050 Hb_000077_330--Hb_008692_010 Hb_001649_040 Hb_001649_040 Hb_000077_330--Hb_001649_040 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_012553_020 Hb_012553_020 Hb_000077_330--Hb_012553_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.02855 0.8621 0.685826 0 0.368336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0638838 0.0502344 0 6.55841 1.3162

CAGE analysis