Hb_001649_040

Information

Type -
Description -
Location Contig1649: 12315-21883
Sequence    

Annotation

kegg
ID rcu:RCOM_1063390
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002521450.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID B9S631
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1063390 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001649_040 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_000077_330 0.1370743574 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
3 Hb_003399_030 0.1453978036 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
4 Hb_011200_020 0.1512049664 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_018591_050 0.1519301764 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
6 Hb_001504_220 0.1609275424 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_008692_010 0.1609857848 - - putative polyol transported protein 2 [Hevea brasiliensis]
8 Hb_000412_060 0.1618537108 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
9 Hb_012553_020 0.1704805168 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
10 Hb_002960_170 0.1807102008 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
11 Hb_031042_030 0.1832413838 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
12 Hb_000098_310 0.1841193131 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
13 Hb_000029_370 0.1854827958 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_002304_140 0.1880065727 - - ring finger protein, putative [Ricinus communis]
15 Hb_001024_030 0.1894678615 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
16 Hb_014037_010 0.192607063 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
17 Hb_025526_010 0.1942871399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
18 Hb_000230_230 0.1948582388 - - hydrolase, putative [Ricinus communis]
19 Hb_000254_040 0.1958505481 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
20 Hb_006788_150 0.1990485673 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001649_040 Hb_001649_040 Hb_000077_330 Hb_000077_330 Hb_001649_040--Hb_000077_330 Hb_003399_030 Hb_003399_030 Hb_001649_040--Hb_003399_030 Hb_011200_020 Hb_011200_020 Hb_001649_040--Hb_011200_020 Hb_018591_050 Hb_018591_050 Hb_001649_040--Hb_018591_050 Hb_001504_220 Hb_001504_220 Hb_001649_040--Hb_001504_220 Hb_008692_010 Hb_008692_010 Hb_001649_040--Hb_008692_010 Hb_000077_330--Hb_018591_050 Hb_032050_050 Hb_032050_050 Hb_000077_330--Hb_032050_050 Hb_000077_330--Hb_008692_010 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_012553_020 Hb_012553_020 Hb_000077_330--Hb_012553_020 Hb_001838_050 Hb_001838_050 Hb_003399_030--Hb_001838_050 Hb_000984_080 Hb_000984_080 Hb_003399_030--Hb_000984_080 Hb_088916_010 Hb_088916_010 Hb_003399_030--Hb_088916_010 Hb_001135_290 Hb_001135_290 Hb_003399_030--Hb_001135_290 Hb_002960_170 Hb_002960_170 Hb_003399_030--Hb_002960_170 Hb_001678_030 Hb_001678_030 Hb_003399_030--Hb_001678_030 Hb_000098_310 Hb_000098_310 Hb_011200_020--Hb_000098_310 Hb_011200_020--Hb_001504_220 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_011200_020--Hb_031042_030 Hb_032631_050 Hb_032631_050 Hb_011200_020--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_011200_020--Hb_000421_270 Hb_018591_050--Hb_008692_010 Hb_025526_010 Hb_025526_010 Hb_018591_050--Hb_025526_010 Hb_007894_260 Hb_007894_260 Hb_018591_050--Hb_007894_260 Hb_000412_060 Hb_000412_060 Hb_018591_050--Hb_000412_060 Hb_003060_080 Hb_003060_080 Hb_018591_050--Hb_003060_080 Hb_001504_220--Hb_012553_020 Hb_014037_010 Hb_014037_010 Hb_001504_220--Hb_014037_010 Hb_001504_220--Hb_003399_030 Hb_000152_810 Hb_000152_810 Hb_001504_220--Hb_000152_810 Hb_011063_060 Hb_011063_060 Hb_001504_220--Hb_011063_060 Hb_008692_010--Hb_025526_010 Hb_000740_130 Hb_000740_130 Hb_008692_010--Hb_000740_130 Hb_008692_010--Hb_007894_260 Hb_000101_360 Hb_000101_360 Hb_008692_010--Hb_000101_360 Hb_008692_010--Hb_003060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232247 0.33719 0.0794203 0.118165 0 0.0424979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0425634 0.0669816 0 1.09204 0.141771

CAGE analysis