Hb_012553_020

Information

Type -
Description -
Location Contig12553: 11842-16640
Sequence    

Annotation

kegg
ID cic:CICLE_v10015035mg
description hypothetical protein
nr
ID KDP34994.1
description hypothetical protein JCGZ_09282 [Jatropha curcas]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID A0A067KT20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09282 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07821: 11777-16678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012553_020 0.0 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
2 Hb_001504_220 0.107617783 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_004855_050 0.1276737683 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
4 Hb_011063_060 0.1408132195 - - PREDICTED: endochitinase-like [Jatropha curcas]
5 Hb_000077_330 0.1424783103 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
6 Hb_008768_010 0.1432042282 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
7 Hb_000984_080 0.1437057346 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
8 Hb_006788_150 0.1489745107 - - conserved hypothetical protein [Ricinus communis]
9 Hb_025526_010 0.1513054238 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
10 Hb_000010_200 0.1522712144 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_031042_030 0.1544492511 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
12 Hb_011200_020 0.155284876 - - aldo-keto reductase, putative [Ricinus communis]
13 Hb_032050_050 0.1553051141 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
14 Hb_003399_030 0.157871923 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
15 Hb_004881_060 0.1588337603 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
16 Hb_018591_050 0.1591886103 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
17 Hb_000230_230 0.1593565745 - - hydrolase, putative [Ricinus communis]
18 Hb_008225_080 0.1607184896 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
19 Hb_007894_260 0.1642484454 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_007875_070 0.1646149898 - - hypothetical protein JCGZ_05017 [Jatropha curcas]

Gene co-expression network

sample Hb_012553_020 Hb_012553_020 Hb_001504_220 Hb_001504_220 Hb_012553_020--Hb_001504_220 Hb_004855_050 Hb_004855_050 Hb_012553_020--Hb_004855_050 Hb_011063_060 Hb_011063_060 Hb_012553_020--Hb_011063_060 Hb_000077_330 Hb_000077_330 Hb_012553_020--Hb_000077_330 Hb_008768_010 Hb_008768_010 Hb_012553_020--Hb_008768_010 Hb_000984_080 Hb_000984_080 Hb_012553_020--Hb_000984_080 Hb_014037_010 Hb_014037_010 Hb_001504_220--Hb_014037_010 Hb_011200_020 Hb_011200_020 Hb_001504_220--Hb_011200_020 Hb_003399_030 Hb_003399_030 Hb_001504_220--Hb_003399_030 Hb_000152_810 Hb_000152_810 Hb_001504_220--Hb_000152_810 Hb_001504_220--Hb_011063_060 Hb_007875_070 Hb_007875_070 Hb_004855_050--Hb_007875_070 Hb_004855_050--Hb_000984_080 Hb_000976_020 Hb_000976_020 Hb_004855_050--Hb_000976_020 Hb_008225_080 Hb_008225_080 Hb_004855_050--Hb_008225_080 Hb_000189_260 Hb_000189_260 Hb_004855_050--Hb_000189_260 Hb_001660_040 Hb_001660_040 Hb_011063_060--Hb_001660_040 Hb_011063_060--Hb_008225_080 Hb_010334_040 Hb_010334_040 Hb_011063_060--Hb_010334_040 Hb_000288_140 Hb_000288_140 Hb_011063_060--Hb_000288_140 Hb_000025_740 Hb_000025_740 Hb_011063_060--Hb_000025_740 Hb_005010_040 Hb_005010_040 Hb_011063_060--Hb_005010_040 Hb_018591_050 Hb_018591_050 Hb_000077_330--Hb_018591_050 Hb_032050_050 Hb_032050_050 Hb_000077_330--Hb_032050_050 Hb_008692_010 Hb_008692_010 Hb_000077_330--Hb_008692_010 Hb_001649_040 Hb_001649_040 Hb_000077_330--Hb_001649_040 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_000422_020 Hb_000422_020 Hb_008768_010--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_008768_010--Hb_000683_010 Hb_004881_060 Hb_004881_060 Hb_008768_010--Hb_004881_060 Hb_025526_010 Hb_025526_010 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_011671_420 Hb_011671_420 Hb_008768_010--Hb_011671_420 Hb_076895_020 Hb_076895_020 Hb_000984_080--Hb_076895_020 Hb_000140_260 Hb_000140_260 Hb_000984_080--Hb_000140_260 Hb_000539_080 Hb_000539_080 Hb_000984_080--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_000984_080--Hb_002110_270 Hb_000758_030 Hb_000758_030 Hb_000984_080--Hb_000758_030 Hb_006006_070 Hb_006006_070 Hb_000984_080--Hb_006006_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05746 35.4561 10.4758 14.5129 0.131741 1.12381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5119 2.05094 5.81195 154.838 15.5398

CAGE analysis