Hb_004855_050

Information

Type -
Description -
Location Contig4855: 60078-61352
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12140g
description POPTRDRAFT_257659; hypothetical protein
nr
ID XP_002323569.2
description hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
swissprot
ID P0C8Q4
description Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
trembl
ID B9IG76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12140g PE=4 SV=2
Gene Ontology
ID GO:0050512
description lactosylceramide 4-alpha-galactosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004855_050 0.0 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
2 Hb_012553_020 0.1276737683 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
3 Hb_007875_070 0.127855803 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
4 Hb_000984_080 0.1383551723 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
5 Hb_000976_020 0.1385098914 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_008225_080 0.1437341694 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
7 Hb_000189_260 0.1479455183 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_220 0.1522135255 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000152_810 0.153633894 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_000939_030 0.1544772366 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
11 Hb_000245_140 0.1550485814 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
12 Hb_002917_010 0.1601807998 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_146023_010 0.1615726487 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004463_040 0.1617079486 - - -
15 Hb_006452_050 0.1631854253 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
16 Hb_009230_040 0.1638802862 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000758_030 0.1658674646 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
18 Hb_001357_260 0.1679609398 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_112082_030 0.1680898156 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_001693_020 0.1686964177 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004855_050 Hb_004855_050 Hb_012553_020 Hb_012553_020 Hb_004855_050--Hb_012553_020 Hb_007875_070 Hb_007875_070 Hb_004855_050--Hb_007875_070 Hb_000984_080 Hb_000984_080 Hb_004855_050--Hb_000984_080 Hb_000976_020 Hb_000976_020 Hb_004855_050--Hb_000976_020 Hb_008225_080 Hb_008225_080 Hb_004855_050--Hb_008225_080 Hb_000189_260 Hb_000189_260 Hb_004855_050--Hb_000189_260 Hb_001504_220 Hb_001504_220 Hb_012553_020--Hb_001504_220 Hb_011063_060 Hb_011063_060 Hb_012553_020--Hb_011063_060 Hb_000077_330 Hb_000077_330 Hb_012553_020--Hb_000077_330 Hb_008768_010 Hb_008768_010 Hb_012553_020--Hb_008768_010 Hb_012553_020--Hb_000984_080 Hb_007875_070--Hb_008225_080 Hb_007875_070--Hb_000976_020 Hb_001013_040 Hb_001013_040 Hb_007875_070--Hb_001013_040 Hb_000758_030 Hb_000758_030 Hb_007875_070--Hb_000758_030 Hb_008080_040 Hb_008080_040 Hb_007875_070--Hb_008080_040 Hb_000381_030 Hb_000381_030 Hb_007875_070--Hb_000381_030 Hb_076895_020 Hb_076895_020 Hb_000984_080--Hb_076895_020 Hb_000140_260 Hb_000140_260 Hb_000984_080--Hb_000140_260 Hb_000539_080 Hb_000539_080 Hb_000984_080--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_000984_080--Hb_002110_270 Hb_000984_080--Hb_000758_030 Hb_006006_070 Hb_006006_070 Hb_000984_080--Hb_006006_070 Hb_000976_020--Hb_008225_080 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_008225_080--Hb_000758_030 Hb_008225_080--Hb_000984_080 Hb_008225_080--Hb_002110_270 Hb_008225_080--Hb_006006_070 Hb_000189_260--Hb_020332_040 Hb_002917_010 Hb_002917_010 Hb_000189_260--Hb_002917_010 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.277635 0.0760749 0.0924058 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0296941 0.0554042 1.35458 0.061654

CAGE analysis