Hb_000101_360

Information

Type -
Description -
Location Contig101: 337580-341185
Sequence    

Annotation

kegg
ID tcc:TCM_042542
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_012090963.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LC59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01293 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00594: 337706-338022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_360 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
2 Hb_008692_010 0.1276801201 - - putative polyol transported protein 2 [Hevea brasiliensis]
3 Hb_002542_090 0.1367574022 - - Potassium transporter, putative [Ricinus communis]
4 Hb_000010_200 0.1374252002 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_025526_010 0.1443861079 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
6 Hb_002928_220 0.146065956 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_007894_260 0.1512355314 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_009486_100 0.1564142127 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_006938_010 0.159065908 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
10 Hb_018591_050 0.160424558 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
11 Hb_056101_010 0.1650000779 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
12 Hb_005010_040 0.1655175323 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
13 Hb_006569_110 0.1656047305 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002200_060 0.1672428545 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
15 Hb_006788_150 0.1683224325 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009785_010 0.1692222694 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
17 Hb_000575_110 0.1701921807 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
18 Hb_012553_020 0.171068469 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
19 Hb_000661_230 0.1722372937 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
20 Hb_001331_040 0.172998287 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000101_360 Hb_000101_360 Hb_008692_010 Hb_008692_010 Hb_000101_360--Hb_008692_010 Hb_002542_090 Hb_002542_090 Hb_000101_360--Hb_002542_090 Hb_000010_200 Hb_000010_200 Hb_000101_360--Hb_000010_200 Hb_025526_010 Hb_025526_010 Hb_000101_360--Hb_025526_010 Hb_002928_220 Hb_002928_220 Hb_000101_360--Hb_002928_220 Hb_007894_260 Hb_007894_260 Hb_000101_360--Hb_007894_260 Hb_018591_050 Hb_018591_050 Hb_008692_010--Hb_018591_050 Hb_008692_010--Hb_025526_010 Hb_000740_130 Hb_000740_130 Hb_008692_010--Hb_000740_130 Hb_008692_010--Hb_007894_260 Hb_003060_080 Hb_003060_080 Hb_008692_010--Hb_003060_080 Hb_006938_010 Hb_006938_010 Hb_002542_090--Hb_006938_010 Hb_005010_040 Hb_005010_040 Hb_002542_090--Hb_005010_040 Hb_002542_090--Hb_002928_220 Hb_001331_040 Hb_001331_040 Hb_002542_090--Hb_001331_040 Hb_002542_090--Hb_000010_200 Hb_001856_060 Hb_001856_060 Hb_002542_090--Hb_001856_060 Hb_002686_390 Hb_002686_390 Hb_000010_200--Hb_002686_390 Hb_000381_030 Hb_000381_030 Hb_000010_200--Hb_000381_030 Hb_000010_200--Hb_001331_040 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_006949_030 Hb_006949_030 Hb_000010_200--Hb_006949_030 Hb_000010_200--Hb_007894_260 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_025526_010--Hb_003060_080 Hb_006970_100 Hb_006970_100 Hb_002928_220--Hb_006970_100 Hb_000149_120 Hb_000149_120 Hb_002928_220--Hb_000149_120 Hb_006569_110 Hb_006569_110 Hb_002928_220--Hb_006569_110 Hb_009486_100 Hb_009486_100 Hb_002928_220--Hb_009486_100 Hb_002928_220--Hb_006938_010 Hb_007894_260--Hb_006569_110 Hb_007894_260--Hb_006938_010 Hb_007894_260--Hb_003060_080 Hb_007894_260--Hb_000381_030 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172663 0.458567 0.187791 0.0860176 0.0226657 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521834 0 0.0196699 1.42437 0.28525

CAGE analysis