Hb_000453_130

Information

Type -
Description -
Location Contig453: 68029-71130
Sequence    

Annotation

kegg
ID rcu:RCOM_1394280
description hypothetical protein
nr
ID XP_012075969.1
description PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
swissprot
ID C0LGH8
description Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=2 SV=1
trembl
ID A0A067KE48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11061 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43259: 70145-71027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_130 0.0 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
2 Hb_001014_150 0.1501026826 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000847_020 0.15236244 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
4 Hb_006538_010 0.1593944127 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
5 Hb_004800_220 0.1655872541 - - PREDICTED: random slug protein 5 [Jatropha curcas]
6 Hb_008145_010 0.169118754 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_000445_030 0.1697461319 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
8 Hb_025526_080 0.1706332018 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
9 Hb_000265_080 0.1783940895 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
10 Hb_004920_110 0.1844562978 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001141_040 0.1846973079 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
12 Hb_000649_180 0.1853259948 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
13 Hb_003085_080 0.1900488101 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_008033_060 0.1909157091 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_000816_020 0.197225792 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
16 Hb_009898_030 0.1990002969 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
17 Hb_000692_110 0.201320377 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
18 Hb_000527_070 0.2023312597 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
19 Hb_082683_010 0.2029625145 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_002200_060 0.2058267039 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000453_130 Hb_000453_130 Hb_001014_150 Hb_001014_150 Hb_000453_130--Hb_001014_150 Hb_000847_020 Hb_000847_020 Hb_000453_130--Hb_000847_020 Hb_006538_010 Hb_006538_010 Hb_000453_130--Hb_006538_010 Hb_004800_220 Hb_004800_220 Hb_000453_130--Hb_004800_220 Hb_008145_010 Hb_008145_010 Hb_000453_130--Hb_008145_010 Hb_000445_030 Hb_000445_030 Hb_000453_130--Hb_000445_030 Hb_001014_150--Hb_006538_010 Hb_003085_080 Hb_003085_080 Hb_001014_150--Hb_003085_080 Hb_002640_040 Hb_002640_040 Hb_001014_150--Hb_002640_040 Hb_006788_150 Hb_006788_150 Hb_001014_150--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_001014_150--Hb_000661_230 Hb_010839_010 Hb_010839_010 Hb_001014_150--Hb_010839_010 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_006538_010--Hb_006788_150 Hb_005010_040 Hb_005010_040 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_006538_010--Hb_000661_230 Hb_002200_060 Hb_002200_060 Hb_004800_220--Hb_002200_060 Hb_000265_080 Hb_000265_080 Hb_004800_220--Hb_000265_080 Hb_004800_220--Hb_008145_010 Hb_008097_020 Hb_008097_020 Hb_004800_220--Hb_008097_020 Hb_025526_080 Hb_025526_080 Hb_004800_220--Hb_025526_080 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190 Hb_149515_010 Hb_149515_010 Hb_008145_010--Hb_149515_010 Hb_000649_180 Hb_000649_180 Hb_008145_010--Hb_000649_180 Hb_007919_040 Hb_007919_040 Hb_008145_010--Hb_007919_040 Hb_008145_010--Hb_000527_070 Hb_003640_010 Hb_003640_010 Hb_000445_030--Hb_003640_010 Hb_002622_010 Hb_002622_010 Hb_000445_030--Hb_002622_010 Hb_029576_080 Hb_029576_080 Hb_000445_030--Hb_029576_080 Hb_001660_050 Hb_001660_050 Hb_000445_030--Hb_001660_050 Hb_000445_030--Hb_003085_080 Hb_013848_030 Hb_013848_030 Hb_000445_030--Hb_013848_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538593 3.13301 2.79306 1.82669 0 0.194511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.129395 1.40752 7.83502 2.91791

CAGE analysis