Hb_000445_030

Information

Type -
Description -
Location Contig445: 33739-34946
Sequence    

Annotation

kegg
ID rcu:RCOM_0562170
description 1-aminocyclopropane-1-carboxylate oxidase, putative (EC:1.14.17.4)
nr
ID XP_012078315.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
swissprot
ID Q0WPW4
description 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1
trembl
ID E6NU76
description JMS09K11.4 protein OS=Jatropha curcas GN=JMS09K11.4 PE=3 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42853: 34135-34652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_030 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
2 Hb_003640_010 0.1273178328 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
3 Hb_002622_010 0.1585381024 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
4 Hb_029576_080 0.1589548889 - - Aspartic proteinase precursor, putative [Ricinus communis]
5 Hb_001660_050 0.1603262713 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
6 Hb_003085_080 0.1625613178 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_013848_030 0.165854016 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
8 Hb_000120_880 0.1662867004 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
9 Hb_001141_040 0.166613496 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
10 Hb_000453_130 0.1697461319 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
11 Hb_001014_150 0.1703834352 - - zinc finger protein, putative [Ricinus communis]
12 Hb_006538_010 0.1713493905 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_000816_020 0.1736269466 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
14 Hb_135554_010 0.1751372747 - - Insulin-degrading enzyme, putative [Ricinus communis]
15 Hb_029866_110 0.1770601431 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
16 Hb_007130_010 0.1788166024 - - -
17 Hb_000917_120 0.1794842123 - - conserved hypothetical protein [Ricinus communis]
18 Hb_082683_010 0.1797138164 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_004128_090 0.180103917 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
20 Hb_010839_010 0.1808432359 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000445_030 Hb_000445_030 Hb_003640_010 Hb_003640_010 Hb_000445_030--Hb_003640_010 Hb_002622_010 Hb_002622_010 Hb_000445_030--Hb_002622_010 Hb_029576_080 Hb_029576_080 Hb_000445_030--Hb_029576_080 Hb_001660_050 Hb_001660_050 Hb_000445_030--Hb_001660_050 Hb_003085_080 Hb_003085_080 Hb_000445_030--Hb_003085_080 Hb_013848_030 Hb_013848_030 Hb_000445_030--Hb_013848_030 Hb_003640_010--Hb_013848_030 Hb_000120_880 Hb_000120_880 Hb_003640_010--Hb_000120_880 Hb_003640_010--Hb_003085_080 Hb_002448_020 Hb_002448_020 Hb_003640_010--Hb_002448_020 Hb_003640_010--Hb_002622_010 Hb_002622_010--Hb_001660_050 Hb_001607_070 Hb_001607_070 Hb_002622_010--Hb_001607_070 Hb_004943_010 Hb_004943_010 Hb_002622_010--Hb_004943_010 Hb_009659_040 Hb_009659_040 Hb_002622_010--Hb_009659_040 Hb_000203_080 Hb_000203_080 Hb_002622_010--Hb_000203_080 Hb_002622_010--Hb_029576_080 Hb_029576_080--Hb_001660_050 Hb_010839_010 Hb_010839_010 Hb_029576_080--Hb_010839_010 Hb_000917_120 Hb_000917_120 Hb_029576_080--Hb_000917_120 Hb_029576_080--Hb_009659_040 Hb_000011_120 Hb_000011_120 Hb_029576_080--Hb_000011_120 Hb_170878_050 Hb_170878_050 Hb_029576_080--Hb_170878_050 Hb_001660_050--Hb_170878_050 Hb_001660_050--Hb_009659_040 Hb_029866_110 Hb_029866_110 Hb_001660_050--Hb_029866_110 Hb_001660_050--Hb_000917_120 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_003085_080--Hb_000203_080 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_000215_250 Hb_000215_250 Hb_013848_030--Hb_000215_250 Hb_013848_030--Hb_003085_080 Hb_002811_020 Hb_002811_020 Hb_013848_030--Hb_002811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.684792 0.477984 0.663566 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0830194 0.152474 2.03819 1.27074

CAGE analysis