Hb_001189_100

Information

Type transcription factor
Description TF Family: NAC
Location Contig1189: 67458-72455
Sequence    

Annotation

kegg
ID rcu:RCOM_1341410
description transcription factor, putative
nr
ID XP_012083811.1
description PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID R4N7S1
description NAC transcription factor 067 OS=Jatropha curcas GN=JCGZ_14159 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05591: 65939-66959 , PASA_asmbl_05592: 67636-71608 , PASA_asmbl_05593: 69774-70114 , PASA_asmbl_05594: 70702-71011 , PASA_asmbl_05595: 69037-69768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_100 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
2 Hb_000398_140 0.1007410109 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
3 Hb_004079_100 0.1126182342 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
4 Hb_073808_010 0.1152865102 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
5 Hb_019026_050 0.1154348121 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008066_080 0.1191908163 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
7 Hb_000594_160 0.1217234472 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_013848_030 0.1224719436 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
9 Hb_003142_060 0.1227922967 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
10 Hb_003106_110 0.1252837698 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
11 Hb_000692_110 0.1259643885 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
12 Hb_003879_020 0.1273895687 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
13 Hb_000254_010 0.130111422 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
14 Hb_000003_020 0.1310265152 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
15 Hb_000120_320 0.1349785597 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001040_200 0.137052594 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
17 Hb_015306_010 0.1378980836 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
18 Hb_005766_010 0.138242302 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000483_130 0.1404749317 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
20 Hb_003656_090 0.1416073802 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_100 Hb_001189_100 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_008066_080 Hb_008066_080 Hb_001189_100--Hb_008066_080 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_004421_010 Hb_004421_010 Hb_000398_140--Hb_004421_010 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_012743_020 Hb_012743_020 Hb_000398_140--Hb_012743_020 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_004079_100--Hb_000594_160 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_001728_130 Hb_001728_130 Hb_073808_010--Hb_001728_130 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020 Hb_003847_050 Hb_003847_050 Hb_019026_050--Hb_003847_050 Hb_023956_010 Hb_023956_010 Hb_019026_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_019026_050--Hb_006846_030 Hb_002553_070 Hb_002553_070 Hb_019026_050--Hb_002553_070 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_000692_110 Hb_000692_110 Hb_008066_080--Hb_000692_110 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_007386_030 Hb_007386_030 Hb_000594_160--Hb_007386_030 Hb_001040_200 Hb_001040_200 Hb_000594_160--Hb_001040_200 Hb_005731_070 Hb_005731_070 Hb_000594_160--Hb_005731_070 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200738 6.92459 7.49667 13.6693 0.132816 0.440881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249708 0.0589522 1.07368 12.6322 7.67006

CAGE analysis