Hb_008066_080

Information

Type -
Description -
Location Contig8066: 49608-59903
Sequence    

Annotation

kegg
ID rcu:RCOM_0044200
description zinc finger protein, putative
nr
ID XP_012073115.1
description PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
swissprot
ID Q9SSA7
description GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2
trembl
ID A0A067LFQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06609 PE=4 SV=1
Gene Ontology
ID GO:0016298
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59063: 50839-51866 , PASA_asmbl_59064: 54308-55934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_080 0.0 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
2 Hb_001189_100 0.1191908163 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
3 Hb_001439_010 0.1301370119 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
4 Hb_000692_110 0.1329782083 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
5 Hb_003879_020 0.1338254257 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
6 Hb_006469_090 0.1349767157 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
7 Hb_003607_140 0.1452534543 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
8 Hb_000680_070 0.1487059411 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
9 Hb_001353_020 0.1515471864 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000398_140 0.1527698501 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
11 Hb_013848_030 0.1550000356 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
12 Hb_003656_090 0.15700666 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
13 Hb_005663_090 0.1576873668 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
14 Hb_000254_010 0.1591516396 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
15 Hb_001310_050 0.1621933391 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
16 Hb_000616_010 0.1627210746 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000313_230 0.1630223161 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
18 Hb_005332_050 0.1639693033 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
19 Hb_002909_080 0.1656856839 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
20 Hb_113119_010 0.1666529032 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_008066_080 Hb_008066_080 Hb_001189_100 Hb_001189_100 Hb_008066_080--Hb_001189_100 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_000692_110 Hb_000692_110 Hb_008066_080--Hb_000692_110 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_001439_010--Hb_006469_090 Hb_000680_070 Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_005663_090 Hb_005663_090 Hb_001439_010--Hb_005663_090 Hb_001439_010--Hb_003607_140 Hb_001439_010--Hb_003879_020 Hb_004032_110 Hb_004032_110 Hb_001439_010--Hb_004032_110 Hb_000616_010 Hb_000616_010 Hb_000692_110--Hb_000616_010 Hb_000692_110--Hb_001189_100 Hb_009554_030 Hb_009554_030 Hb_000692_110--Hb_009554_030 Hb_005766_010 Hb_005766_010 Hb_000692_110--Hb_005766_010 Hb_000692_110--Hb_000594_160 Hb_003879_020--Hb_000398_140 Hb_000731_210 Hb_000731_210 Hb_003879_020--Hb_000731_210 Hb_003879_020--Hb_003607_140 Hb_000210_040 Hb_000210_040 Hb_003879_020--Hb_000210_040 Hb_010174_180 Hb_010174_180 Hb_003879_020--Hb_010174_180 Hb_007850_110 Hb_007850_110 Hb_006469_090--Hb_007850_110 Hb_000866_190 Hb_000866_190 Hb_006469_090--Hb_000866_190 Hb_006469_090--Hb_003607_140 Hb_006469_090--Hb_005663_090 Hb_006469_090--Hb_000680_070 Hb_003607_140--Hb_010174_180 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_003607_140--Hb_000210_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0311671 0.981294 1.79069 2.74969 0.0392224 0.0226724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0235406 0.00926271 0.462063 2.26441 2.33963

CAGE analysis