Hb_013848_030

Information

Type -
Description -
Location Contig13848: 34260-38860
Sequence    

Annotation

kegg
ID rcu:RCOM_1173140
description tyrosine aminotransferase, putative (EC:2.6.1.5)
nr
ID XP_012088234.1
description PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
swissprot
ID Q9LVY1
description Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1
trembl
ID A0A067JX30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25751 PE=4 SV=1
Gene Ontology
ID GO:0004838
description probable aminotransferase tat2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10545: 34088-38798 , PASA_asmbl_10546: 34268-38798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013848_030 0.0 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
2 Hb_003640_010 0.1017494168 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
3 Hb_188281_050 0.1145786299 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
4 Hb_001189_100 0.1224719436 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
5 Hb_000215_250 0.1225157024 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
6 Hb_003085_080 0.1286514949 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002811_020 0.136459695 - - Cysteine synthase [Morus notabilis]
8 Hb_015306_010 0.1380868052 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
9 Hb_000203_080 0.1434723078 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
10 Hb_003092_050 0.1442897224 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
11 Hb_001971_050 0.1448970617 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002622_010 0.1450002653 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
13 Hb_000970_020 0.1452183123 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
14 Hb_000112_050 0.1453441447 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
15 Hb_003562_030 0.1456497205 - - -
16 Hb_000692_110 0.1461112728 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
17 Hb_003106_110 0.1473040498 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
18 Hb_001963_110 0.148747164 - - -
19 Hb_001040_200 0.1495575252 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
20 Hb_002448_020 0.1500906005 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_013848_030 Hb_013848_030 Hb_003640_010 Hb_003640_010 Hb_013848_030--Hb_003640_010 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_000215_250 Hb_000215_250 Hb_013848_030--Hb_000215_250 Hb_003085_080 Hb_003085_080 Hb_013848_030--Hb_003085_080 Hb_002811_020 Hb_002811_020 Hb_013848_030--Hb_002811_020 Hb_000120_880 Hb_000120_880 Hb_003640_010--Hb_000120_880 Hb_003640_010--Hb_003085_080 Hb_000445_030 Hb_000445_030 Hb_003640_010--Hb_000445_030 Hb_002448_020 Hb_002448_020 Hb_003640_010--Hb_002448_020 Hb_002622_010 Hb_002622_010 Hb_003640_010--Hb_002622_010 Hb_000112_050 Hb_000112_050 Hb_188281_050--Hb_000112_050 Hb_001040_200 Hb_001040_200 Hb_188281_050--Hb_001040_200 Hb_003562_030 Hb_003562_030 Hb_188281_050--Hb_003562_030 Hb_188281_050--Hb_003085_080 Hb_001493_020 Hb_001493_020 Hb_188281_050--Hb_001493_020 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_008066_080 Hb_008066_080 Hb_001189_100--Hb_008066_080 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_002420_010 Hb_002420_010 Hb_000215_250--Hb_002420_010 Hb_000215_250--Hb_002811_020 Hb_003092_050 Hb_003092_050 Hb_000215_250--Hb_003092_050 Hb_000215_250--Hb_001493_020 Hb_082683_010 Hb_082683_010 Hb_000215_250--Hb_082683_010 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_002811_020--Hb_003085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.439683 6.92733 7.30605 13.0331 0.0272322 0.709257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0662729 0.0521372 1.02644 20.8367 13.6584

CAGE analysis