Hb_149515_010

Information

Type -
Description -
Location Contig149515: 2-1084
Sequence    

Annotation

kegg
ID rcu:RCOM_0423490
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:3.6.3.44 3.6.3.43)
nr
ID XP_002533032.1
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID B9T463
description Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative OS=Ricinus communis GN=RCOM_0423490 PE=3 SV=1
Gene Ontology
ID GO:0000166
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149515_010 0.0 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
2 Hb_008145_010 0.1457134953 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_011909_010 0.1551341327 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
4 Hb_000649_180 0.1568467677 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
5 Hb_002291_020 0.1579552009 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_007919_040 0.1653647163 - - PREDICTED: protein LYK5 [Jatropha curcas]
7 Hb_000141_010 0.1709047043 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
8 Hb_118157_020 0.1709709301 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
9 Hb_000527_070 0.1720481671 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
10 Hb_008749_090 0.1806250729 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
11 Hb_003517_010 0.1865964081 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
12 Hb_000840_040 0.1867577692 - - monoxygenase, putative [Ricinus communis]
13 Hb_003517_020 0.189596002 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
14 Hb_002527_050 0.1941162268 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
15 Hb_000227_330 0.1968475954 - - Acyl-CoA synthetase [Ricinus communis]
16 Hb_000866_110 0.1977182133 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
17 Hb_006700_040 0.1989733687 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
18 Hb_002524_030 0.1991561481 - - -
19 Hb_000011_420 0.1993313992 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
20 Hb_000205_250 0.200944827 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]

Gene co-expression network

sample Hb_149515_010 Hb_149515_010 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_004800_220 Hb_004800_220 Hb_008145_010--Hb_004800_220 Hb_000453_130 Hb_000453_130 Hb_008145_010--Hb_000453_130 Hb_008145_010--Hb_000649_180 Hb_008145_010--Hb_007919_040 Hb_000527_070 Hb_000527_070 Hb_008145_010--Hb_000527_070 Hb_000345_320 Hb_000345_320 Hb_011909_010--Hb_000345_320 Hb_000317_350 Hb_000317_350 Hb_011909_010--Hb_000317_350 Hb_000209_100 Hb_000209_100 Hb_011909_010--Hb_000209_100 Hb_082741_010 Hb_082741_010 Hb_011909_010--Hb_082741_010 Hb_000205_250 Hb_000205_250 Hb_011909_010--Hb_000205_250 Hb_028811_010 Hb_028811_010 Hb_011909_010--Hb_028811_010 Hb_000649_180--Hb_002291_020 Hb_002527_050 Hb_002527_050 Hb_000649_180--Hb_002527_050 Hb_008033_060 Hb_008033_060 Hb_000649_180--Hb_008033_060 Hb_000649_180--Hb_000453_130 Hb_001754_260 Hb_001754_260 Hb_000649_180--Hb_001754_260 Hb_002291_020--Hb_007919_040 Hb_002291_020--Hb_000141_010 Hb_012565_040 Hb_012565_040 Hb_002291_020--Hb_012565_040 Hb_002291_020--Hb_000527_070 Hb_003576_050 Hb_003576_050 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_000141_010--Hb_000527_070 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.867162 6.5792 2.40341 1.80102 0.464227 0.544212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.6915 0.760524 3.85059 11.7184 4.65236

CAGE analysis