Hb_001754_260

Information

Type -
Description -
Location Contig1754: 159182-164622
Sequence    

Annotation

kegg
ID pop:POPTR_0034s00200g
description hypothetical protein
nr
ID XP_012083909.1
description PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18859 PE=4 SV=1
Gene Ontology
ID GO:0003677
description PREDICTED: uncharacterized protein LOC105643409 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16811: 159359-161334 , PASA_asmbl_16812: 161347-162516 , PASA_asmbl_16813: 162571-164586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_260 0.0 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
2 Hb_007951_070 0.161347434 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_000027_100 0.1702006329 - - hypothetical protein VITISV_039936 [Vitis vinifera]
4 Hb_004920_110 0.1802126552 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000847_020 0.1828634446 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
6 Hb_018616_040 0.1839524121 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_000094_120 0.1868210009 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
8 Hb_000649_180 0.1892472764 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
9 Hb_003337_050 0.1999831215 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
10 Hb_000527_070 0.2032202788 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
11 Hb_000120_870 0.2033635639 rubber biosynthesis Gene Name: CPT6 -
12 Hb_000254_010 0.2052322464 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
13 Hb_068576_010 0.2062513196 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
14 Hb_021576_120 0.2066673183 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
15 Hb_000453_130 0.2093407933 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
16 Hb_000141_010 0.2101841638 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
17 Hb_001123_190 0.2122395662 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
18 Hb_064985_010 0.2125810101 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
19 Hb_002597_020 0.2155901274 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_001365_050 0.2165296458 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001754_260 Hb_001754_260 Hb_007951_070 Hb_007951_070 Hb_001754_260--Hb_007951_070 Hb_000027_100 Hb_000027_100 Hb_001754_260--Hb_000027_100 Hb_004920_110 Hb_004920_110 Hb_001754_260--Hb_004920_110 Hb_000847_020 Hb_000847_020 Hb_001754_260--Hb_000847_020 Hb_018616_040 Hb_018616_040 Hb_001754_260--Hb_018616_040 Hb_000094_120 Hb_000094_120 Hb_001754_260--Hb_000094_120 Hb_000120_870 Hb_000120_870 Hb_007951_070--Hb_000120_870 Hb_007237_010 Hb_007237_010 Hb_007951_070--Hb_007237_010 Hb_000116_330 Hb_000116_330 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_007951_070--Hb_018616_040 Hb_004525_020 Hb_004525_020 Hb_000027_100--Hb_004525_020 Hb_000027_100--Hb_018616_040 Hb_000027_100--Hb_000116_330 Hb_000417_250 Hb_000417_250 Hb_000027_100--Hb_000417_250 Hb_001556_020 Hb_001556_020 Hb_000027_100--Hb_001556_020 Hb_000027_100--Hb_007951_070 Hb_021576_120 Hb_021576_120 Hb_004920_110--Hb_021576_120 Hb_000254_010 Hb_000254_010 Hb_004920_110--Hb_000254_010 Hb_004920_110--Hb_000847_020 Hb_083412_010 Hb_083412_010 Hb_004920_110--Hb_083412_010 Hb_001048_100 Hb_001048_100 Hb_004920_110--Hb_001048_100 Hb_000616_010 Hb_000616_010 Hb_004920_110--Hb_000616_010 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_018616_040--Hb_004525_020 Hb_018616_040--Hb_004920_110 Hb_018616_040--Hb_000847_020 Hb_000760_080 Hb_000760_080 Hb_018616_040--Hb_000760_080 Hb_000094_250 Hb_000094_250 Hb_000094_120--Hb_000094_250 Hb_000062_490 Hb_000062_490 Hb_000094_120--Hb_000062_490 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_002030_180 Hb_002030_180 Hb_000094_120--Hb_002030_180 Hb_006615_160 Hb_006615_160 Hb_000094_120--Hb_006615_160 Hb_005539_260 Hb_005539_260 Hb_000094_120--Hb_005539_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0996031 9.6219 5.55756 2.876 0.0356342 0.0383065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11001 0.140677 3.37693 6.80521 4.62183

CAGE analysis