Hb_001556_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1556: 58358-63613
Sequence    

Annotation

kegg
ID rcu:RCOM_0742270
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002525518.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SHP9
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0742270 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13502: 59635-60118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001556_020 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_000417_410 0.1349656196 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
3 Hb_000453_280 0.1445178078 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
4 Hb_000522_010 0.1450476991 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
5 Hb_002783_140 0.1490654553 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
6 Hb_003517_100 0.1552426489 transcription factor TF Family: GRAS -
7 Hb_000027_100 0.1578198777 - - hypothetical protein VITISV_039936 [Vitis vinifera]
8 Hb_002217_070 0.1639646355 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
9 Hb_001722_070 0.1642604377 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
10 Hb_000365_220 0.1642628943 - - protein phosphatase-1, putative [Ricinus communis]
11 Hb_004525_020 0.1679374474 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
12 Hb_001619_160 0.1688363532 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
13 Hb_000203_210 0.1691193233 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
14 Hb_119327_010 0.1703752614 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
15 Hb_000685_130 0.1706452088 - - PREDICTED: uncharacterized protein LOC105351820 [Fragaria vesca subsp. vesca]
16 Hb_006052_060 0.1709746856 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_000575_090 0.1716045308 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
18 Hb_000808_260 0.1727291305 - - hypothetical protein RCOM_1434920 [Ricinus communis]
19 Hb_000009_150 0.1730499936 - - carbohydrate transporter, putative [Ricinus communis]
20 Hb_003430_070 0.1733393726 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]

Gene co-expression network

sample Hb_001556_020 Hb_001556_020 Hb_000417_410 Hb_000417_410 Hb_001556_020--Hb_000417_410 Hb_000453_280 Hb_000453_280 Hb_001556_020--Hb_000453_280 Hb_000522_010 Hb_000522_010 Hb_001556_020--Hb_000522_010 Hb_002783_140 Hb_002783_140 Hb_001556_020--Hb_002783_140 Hb_003517_100 Hb_003517_100 Hb_001556_020--Hb_003517_100 Hb_000027_100 Hb_000027_100 Hb_001556_020--Hb_000027_100 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_002888_040 Hb_002888_040 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_000417_410--Hb_000522_010 Hb_001386_020 Hb_001386_020 Hb_000453_280--Hb_001386_020 Hb_002383_050 Hb_002383_050 Hb_000453_280--Hb_002383_050 Hb_000175_270 Hb_000175_270 Hb_000453_280--Hb_000175_270 Hb_000753_140 Hb_000753_140 Hb_000453_280--Hb_000753_140 Hb_000808_260 Hb_000808_260 Hb_000453_280--Hb_000808_260 Hb_008494_090 Hb_008494_090 Hb_000522_010--Hb_008494_090 Hb_000522_010--Hb_000365_220 Hb_000522_010--Hb_003517_100 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_001357_060 Hb_001357_060 Hb_002783_140--Hb_001357_060 Hb_002890_320 Hb_002890_320 Hb_002783_140--Hb_002890_320 Hb_033153_040 Hb_033153_040 Hb_002783_140--Hb_033153_040 Hb_005569_030 Hb_005569_030 Hb_002783_140--Hb_005569_030 Hb_003387_080 Hb_003387_080 Hb_002783_140--Hb_003387_080 Hb_073171_050 Hb_073171_050 Hb_002783_140--Hb_073171_050 Hb_001268_300 Hb_001268_300 Hb_003517_100--Hb_001268_300 Hb_003517_100--Hb_002888_040 Hb_003517_100--Hb_000365_220 Hb_003517_100--Hb_000417_410 Hb_003517_100--Hb_008494_090 Hb_004525_020 Hb_004525_020 Hb_000027_100--Hb_004525_020 Hb_018616_040 Hb_018616_040 Hb_000027_100--Hb_018616_040 Hb_000116_330 Hb_000116_330 Hb_000027_100--Hb_000116_330 Hb_000417_250 Hb_000417_250 Hb_000027_100--Hb_000417_250 Hb_007951_070 Hb_007951_070 Hb_000027_100--Hb_007951_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.180136 9.84627 4.87197 3.13526 0.0153934 0.119772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04692 0.919923 0.130906 4.61772 6.15966

CAGE analysis