Hb_004605_020

Information

Type -
Description -
Location Contig4605: 58239-60725
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14170g
description POPTRDRAFT_574570; hypothetical protein
nr
ID XP_012092438.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
swissprot
ID O64477
description G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1
trembl
ID B9INU0
description Serine/threonine-protein kinase OS=Populus trichocarpa GN=POPTR_0019s14170g PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at2g19130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43698: 58194-61037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004605_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
2 Hb_061908_020 0.0694175787 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_027337_030 0.1150734299 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
4 Hb_002217_070 0.1166395375 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
5 Hb_006618_020 0.1188956967 - - Vacuolar-processing enzyme precursor [Ricinus communis]
6 Hb_002609_130 0.1221081196 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
7 Hb_062229_010 0.1247942265 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_000369_070 0.1272313205 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_000522_010 0.1289615682 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
10 Hb_083242_020 0.1305432437 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
11 Hb_001391_100 0.132403457 - - AMP dependent ligase, putative [Ricinus communis]
12 Hb_005155_010 0.1339559053 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000816_160 0.1341555455 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
14 Hb_003517_090 0.1353204696 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
15 Hb_001951_230 0.1370176728 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
16 Hb_001689_030 0.1394227075 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
17 Hb_073973_020 0.1414922125 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
18 Hb_002888_040 0.143265443 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
19 Hb_003177_090 0.1434942715 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
20 Hb_006052_060 0.1453027967 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_004605_020 Hb_004605_020 Hb_061908_020 Hb_061908_020 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_061908_020--Hb_027337_030 Hb_061908_020--Hb_006618_020 Hb_083242_020 Hb_083242_020 Hb_027337_030--Hb_083242_020 Hb_004007_230 Hb_004007_230 Hb_027337_030--Hb_004007_230 Hb_004032_330 Hb_004032_330 Hb_027337_030--Hb_004032_330 Hb_002110_110 Hb_002110_110 Hb_027337_030--Hb_002110_110 Hb_073973_020 Hb_073973_020 Hb_002217_070--Hb_073973_020 Hb_002218_070 Hb_002218_070 Hb_002217_070--Hb_002218_070 Hb_003517_100 Hb_003517_100 Hb_002217_070--Hb_003517_100 Hb_000522_010 Hb_000522_010 Hb_002217_070--Hb_000522_010 Hb_000847_010 Hb_000847_010 Hb_002217_070--Hb_000847_010 Hb_033312_090 Hb_033312_090 Hb_006618_020--Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_006618_020--Hb_000522_130 Hb_002006_060 Hb_002006_060 Hb_006618_020--Hb_002006_060 Hb_000369_070 Hb_000369_070 Hb_006618_020--Hb_000369_070 Hb_005155_010 Hb_005155_010 Hb_002609_130--Hb_005155_010 Hb_002609_130--Hb_000847_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_010261_030 Hb_010261_030 Hb_002609_130--Hb_010261_030 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180 Hb_062229_010--Hb_001391_100 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_062229_010--Hb_010261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40409 78.0306 25.9312 33.1976 1.79543 3.70792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40373 0.922809 2.21211 33.9979 59.5523

CAGE analysis