Hb_000847_010

Information

Type -
Description -
Location Contig847: 16273-27848
Sequence    

Annotation

kegg
ID cit:102608064
description uncharacterized LOC102608064
nr
ID XP_006484867.1
description PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
swissprot
ID Q9LSE7
description Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana GN=At3g25290 PE=2 SV=1
trembl
ID A0A067LDI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15128 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60243: 25388-27847
cDNA
(Sanger)
(ID:Location)		 013_G05.ab1: 25388-26655 , 053_O06.ab1: 25388-26598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_010 0.0 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
2 Hb_004126_030 0.0827039548 - - kinase, putative [Ricinus communis]
3 Hb_002609_130 0.1390680465 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
4 Hb_002217_070 0.1469541643 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
5 Hb_000800_010 0.1536940131 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
6 Hb_005305_030 0.1618589094 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
7 Hb_013405_100 0.1625510263 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
8 Hb_001951_230 0.1645219865 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
9 Hb_002973_030 0.1660786112 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_004605_020 0.1679168747 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
11 Hb_065525_010 0.168060301 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
12 Hb_005155_010 0.1704664473 - - amino acid transporter, putative [Ricinus communis]
13 Hb_002000_130 0.1774987014 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
14 Hb_007850_010 0.1788387072 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
15 Hb_002027_170 0.1802956154 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
16 Hb_005271_180 0.1807472417 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
17 Hb_000979_160 0.1812553073 - - hypothetical protein RCOM_0629030 [Ricinus communis]
18 Hb_000363_250 0.1812575376 - - PREDICTED: pirin-like protein [Malus domestica]
19 Hb_004462_030 0.1820298162 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
20 Hb_000386_050 0.1831543926 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000847_010 Hb_000847_010 Hb_004126_030 Hb_004126_030 Hb_000847_010--Hb_004126_030 Hb_002609_130 Hb_002609_130 Hb_000847_010--Hb_002609_130 Hb_002217_070 Hb_002217_070 Hb_000847_010--Hb_002217_070 Hb_000800_010 Hb_000800_010 Hb_000847_010--Hb_000800_010 Hb_005305_030 Hb_005305_030 Hb_000847_010--Hb_005305_030 Hb_013405_100 Hb_013405_100 Hb_000847_010--Hb_013405_100 Hb_004126_030--Hb_000800_010 Hb_002027_170 Hb_002027_170 Hb_004126_030--Hb_002027_170 Hb_002973_030 Hb_002973_030 Hb_004126_030--Hb_002973_030 Hb_000979_160 Hb_000979_160 Hb_004126_030--Hb_000979_160 Hb_019654_110 Hb_019654_110 Hb_004126_030--Hb_019654_110 Hb_004605_020 Hb_004605_020 Hb_002609_130--Hb_004605_020 Hb_005155_010 Hb_005155_010 Hb_002609_130--Hb_005155_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_010261_030 Hb_010261_030 Hb_002609_130--Hb_010261_030 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180 Hb_002217_070--Hb_004605_020 Hb_073973_020 Hb_073973_020 Hb_002217_070--Hb_073973_020 Hb_002218_070 Hb_002218_070 Hb_002217_070--Hb_002218_070 Hb_003517_100 Hb_003517_100 Hb_002217_070--Hb_003517_100 Hb_000522_010 Hb_000522_010 Hb_002217_070--Hb_000522_010 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_006414_010 Hb_006414_010 Hb_000800_010--Hb_006414_010 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030 Hb_092029_010 Hb_092029_010 Hb_005305_030--Hb_092029_010 Hb_000959_010 Hb_000959_010 Hb_005305_030--Hb_000959_010 Hb_000465_450 Hb_000465_450 Hb_005305_030--Hb_000465_450 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_005305_030--Hb_000522_010 Hb_007237_010 Hb_007237_010 Hb_005305_030--Hb_007237_010 Hb_065525_010 Hb_065525_010 Hb_013405_100--Hb_065525_010 Hb_002004_010 Hb_002004_010 Hb_013405_100--Hb_002004_010 Hb_097634_010 Hb_097634_010 Hb_013405_100--Hb_097634_010 Hb_001318_140 Hb_001318_140 Hb_013405_100--Hb_001318_140 Hb_001619_160 Hb_001619_160 Hb_013405_100--Hb_001619_160 Hb_013405_100--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94501 132.649 20.5757 96.6964 4.03189 2.93634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.51797 8.66798 8.29479 50.1503 115.405

CAGE analysis