Hb_007237_010

Information

Type -
Description -
Location Contig7237: 6492-10599
Sequence    

Annotation

kegg
ID rcu:RCOM_1691140
description hypothetical protein
nr
ID XP_002509932.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FHK4
description Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1
trembl
ID B9RCP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55795: 6242-7106 , PASA_asmbl_55796: 7312-7942 , PASA_asmbl_55797: 7979-10570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000959_010 0.1261750367 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
3 Hb_060198_010 0.1311393444 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_006040_170 0.1348918933 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
5 Hb_000120_870 0.1353558494 rubber biosynthesis Gene Name: CPT6 -
6 Hb_000465_450 0.1356151247 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_007951_070 0.1425484241 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_005488_030 0.1504150759 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
9 Hb_005305_030 0.1510290536 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
10 Hb_143629_200 0.1607562725 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
11 Hb_007747_100 0.1649043903 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
12 Hb_001706_020 0.1684208293 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
13 Hb_003177_090 0.1693025113 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
14 Hb_002609_130 0.1703613841 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
15 Hb_001486_100 0.1703712724 - - tubulin alpha chain, putative [Ricinus communis]
16 Hb_001689_030 0.1721125418 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
17 Hb_026144_030 0.1739394729 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
18 Hb_000215_290 0.1746960281 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
19 Hb_002888_040 0.1757845811 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
20 Hb_000614_190 0.1758053373 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]

Gene co-expression network

sample Hb_007237_010 Hb_007237_010 Hb_000959_010 Hb_000959_010 Hb_007237_010--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_000465_450 Hb_000465_450 Hb_007237_010--Hb_000465_450 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070 Hb_143629_200 Hb_143629_200 Hb_000959_010--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_000959_010--Hb_006040_170 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_000095_070 Hb_000095_070 Hb_060198_010--Hb_000095_070 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_060198_010--Hb_000465_450 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_003177_090 Hb_003177_090 Hb_006040_170--Hb_003177_090 Hb_006040_170--Hb_143629_200 Hb_006040_170--Hb_001486_100 Hb_006040_170--Hb_060198_010 Hb_002344_080 Hb_002344_080 Hb_006040_170--Hb_002344_080 Hb_000120_870--Hb_007951_070 Hb_000116_330 Hb_000116_330 Hb_000120_870--Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_000120_870--Hb_003683_200 Hb_000191_100 Hb_000191_100 Hb_000120_870--Hb_000191_100 Hb_003077_140 Hb_003077_140 Hb_000120_870--Hb_003077_140 Hb_000465_450--Hb_005305_030 Hb_002308_060 Hb_002308_060 Hb_000465_450--Hb_002308_060 Hb_000465_450--Hb_000959_010 Hb_004007_200 Hb_004007_200 Hb_000465_450--Hb_004007_200 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_018616_040 Hb_018616_040 Hb_007951_070--Hb_018616_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0277268 6.1984 3.15765 5.35939 0.162033 0.0750277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0233551 1.33981 4.81751 8.11916

CAGE analysis