Hb_001141_040

Information

Type -
Description -
Location Contig1141: 48766-57523
Sequence    

Annotation

kegg
ID rcu:RCOM_0911430
description protein binding protein, putative
nr
ID XP_012069686.1
description PREDICTED: protein NETWORKED 1A [Jatropha curcas]
swissprot
ID Q9LUI2
description Protein NETWORKED 1A OS=Arabidopsis thaliana GN=NET1A PE=1 SV=1
trembl
ID A0A067KZ63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04229: 48825-57475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_040 0.0 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
2 Hb_002888_060 0.120241491 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
3 Hb_000191_100 0.1384039788 - - cytochrome P450, putative [Ricinus communis]
4 Hb_005568_050 0.1466205381 - - ascorbate peroxidase [Hevea brasiliensis]
5 Hb_002811_020 0.1476509666 - - Cysteine synthase [Morus notabilis]
6 Hb_000442_170 0.1511388664 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_000776_020 0.1544373494 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
8 Hb_007951_070 0.1547547449 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_001963_110 0.1613865158 - - -
10 Hb_000445_030 0.166613496 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
11 Hb_007205_020 0.1674180129 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_003224_010 0.1688343456 - - -
13 Hb_000365_220 0.1693550259 - - protein phosphatase-1, putative [Ricinus communis]
14 Hb_013848_030 0.169543619 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
15 Hb_005523_050 0.1702218484 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
16 Hb_005214_080 0.1702880044 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005496_170 0.1720170786 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
18 Hb_001689_070 0.1728179292 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000640_330 0.1729405425 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001109_130 0.1748810051 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_040 Hb_001141_040 Hb_002888_060 Hb_002888_060 Hb_001141_040--Hb_002888_060 Hb_000191_100 Hb_000191_100 Hb_001141_040--Hb_000191_100 Hb_005568_050 Hb_005568_050 Hb_001141_040--Hb_005568_050 Hb_002811_020 Hb_002811_020 Hb_001141_040--Hb_002811_020 Hb_000442_170 Hb_000442_170 Hb_001141_040--Hb_000442_170 Hb_000776_020 Hb_000776_020 Hb_001141_040--Hb_000776_020 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_001963_110 Hb_001963_110 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_016637_020 Hb_016637_020 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_007205_020 Hb_007205_020 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_001675_270 Hb_001675_270 Hb_005568_050--Hb_001675_270 Hb_000760_080 Hb_000760_080 Hb_005568_050--Hb_000760_080 Hb_000042_380 Hb_000042_380 Hb_005568_050--Hb_000042_380 Hb_003607_140 Hb_003607_140 Hb_005568_050--Hb_003607_140 Hb_010174_180 Hb_010174_180 Hb_005568_050--Hb_010174_180 Hb_002316_020 Hb_002316_020 Hb_005568_050--Hb_002316_020 Hb_003842_010 Hb_003842_010 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_000215_250 Hb_000215_250 Hb_002811_020--Hb_000215_250 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_003085_080 Hb_003085_080 Hb_002811_020--Hb_003085_080 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000442_170--Hb_000776_020 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000442_170--Hb_000191_100 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.487476 11.0202 14.6072 8.35919 0.261171 0.287721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318363 0.378501 2.76644 23.6986 23.6711

CAGE analysis