Hb_000465_450

Information

Type -
Description -
Location Contig465: 414320-415891
Sequence    

Annotation

kegg
ID rcu:RCOM_0191120
description triacylglycerol lipase, putative
nr
ID XP_002532349.1
description triacylglycerol lipase, putative [Ricinus communis]
swissprot
ID O23522
description Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2
trembl
ID B9T280
description Triacylglycerol lipase, putative OS=Ricinus communis GN=RCOM_0191120 PE=4 SV=1
Gene Ontology
ID GO:0008970
description phospholipase a1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_450 0.0 - - triacylglycerol lipase, putative [Ricinus communis]
2 Hb_060198_010 0.1216935594 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_005305_030 0.1326006161 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
4 Hb_002308_060 0.1328955429 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
5 Hb_007237_010 0.1356151247 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000959_010 0.1383805072 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
7 Hb_004007_200 0.1485970035 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
8 Hb_092029_010 0.1500655917 - - Disease resistance protein RPM1, putative [Ricinus communis]
9 Hb_005332_050 0.1524884364 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
10 Hb_001706_020 0.161567271 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
11 Hb_000970_020 0.161691202 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
12 Hb_001109_130 0.1627199653 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
13 Hb_005488_030 0.1629520936 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
14 Hb_187959_010 0.1636435626 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
15 Hb_143629_200 0.1640237065 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
16 Hb_002888_050 0.1652077837 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
17 Hb_001143_140 0.1671061139 - - Aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_026144_030 0.1671554981 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
19 Hb_004307_070 0.1703274016 - - kinase, putative [Ricinus communis]
20 Hb_000095_070 0.1716505153 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000465_450 Hb_000465_450 Hb_060198_010 Hb_060198_010 Hb_000465_450--Hb_060198_010 Hb_005305_030 Hb_005305_030 Hb_000465_450--Hb_005305_030 Hb_002308_060 Hb_002308_060 Hb_000465_450--Hb_002308_060 Hb_007237_010 Hb_007237_010 Hb_000465_450--Hb_007237_010 Hb_000959_010 Hb_000959_010 Hb_000465_450--Hb_000959_010 Hb_004007_200 Hb_004007_200 Hb_000465_450--Hb_004007_200 Hb_000095_070 Hb_000095_070 Hb_060198_010--Hb_000095_070 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_143629_200 Hb_143629_200 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_092029_010 Hb_092029_010 Hb_005305_030--Hb_092029_010 Hb_005305_030--Hb_000959_010 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_000522_010 Hb_000522_010 Hb_005305_030--Hb_000522_010 Hb_005305_030--Hb_007237_010 Hb_003992_220 Hb_003992_220 Hb_002308_060--Hb_003992_220 Hb_000597_080 Hb_000597_080 Hb_002308_060--Hb_000597_080 Hb_001963_110 Hb_001963_110 Hb_002308_060--Hb_001963_110 Hb_170878_060 Hb_170878_060 Hb_002308_060--Hb_170878_060 Hb_001607_070 Hb_001607_070 Hb_002308_060--Hb_001607_070 Hb_002308_060--Hb_092029_010 Hb_007237_010--Hb_000959_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070 Hb_000959_010--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_000959_010--Hb_006040_170 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_000386_050 Hb_000386_050 Hb_004007_200--Hb_000386_050 Hb_187959_010 Hb_187959_010 Hb_004007_200--Hb_187959_010 Hb_001054_060 Hb_001054_060 Hb_004007_200--Hb_001054_060 Hb_000800_010 Hb_000800_010 Hb_004007_200--Hb_000800_010 Hb_002518_180 Hb_002518_180 Hb_004007_200--Hb_002518_180 Hb_006414_010 Hb_006414_010 Hb_004007_200--Hb_006414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.277645 0.159428 0.405494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0232827 0.0438199 0.352934 0.536817

CAGE analysis