Hb_010261_030

Information

Type -
Description -
Location Contig10261: 50836-53820
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID K7KWX1
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005488
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01110: 52210-52439 , PASA_asmbl_01111: 53004-53106 , PASA_asmbl_01112: 53127-53526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010261_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_117840_010 0.1274140754 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_002609_130 0.1402757589 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
4 Hb_062229_010 0.1402927984 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_005155_010 0.1422512886 - - amino acid transporter, putative [Ricinus communis]
6 Hb_002218_070 0.1467607826 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
7 Hb_001971_020 0.1467735425 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
8 Hb_002078_090 0.1532107988 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002217_070 0.1540028754 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
10 Hb_004605_020 0.1545782606 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
11 Hb_000603_120 0.1559540486 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_061908_020 0.1630105098 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_008195_020 0.1710074787 - - Vacuolar-processing enzyme precursor [Ricinus communis]
14 Hb_000563_120 0.1711794688 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
15 Hb_042463_060 0.173713922 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000233_100 0.1742562841 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_043939_010 0.1759560889 - - hypothetical protein B456_N011100 [Gossypium raimondii]
18 Hb_027337_030 0.1765882099 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
19 Hb_155150_010 0.1767019445 - - kinase, putative [Ricinus communis]
20 Hb_000059_080 0.1784369447 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]

Gene co-expression network

sample Hb_010261_030 Hb_010261_030 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_002609_130 Hb_002609_130 Hb_010261_030--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_010261_030--Hb_062229_010 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020 Hb_117840_010--Hb_002218_070 Hb_002600_010 Hb_002600_010 Hb_117840_010--Hb_002600_010 Hb_062479_010 Hb_062479_010 Hb_117840_010--Hb_062479_010 Hb_117840_010--Hb_062229_010 Hb_001879_050 Hb_001879_050 Hb_117840_010--Hb_001879_050 Hb_004605_020 Hb_004605_020 Hb_002609_130--Hb_004605_020 Hb_002609_130--Hb_005155_010 Hb_000847_010 Hb_000847_010 Hb_002609_130--Hb_000847_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_005155_010--Hb_061908_020 Hb_005155_010--Hb_004605_020 Hb_042463_060 Hb_042463_060 Hb_005155_010--Hb_042463_060 Hb_000321_120 Hb_000321_120 Hb_005155_010--Hb_000321_120 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0327923 1.42753 0.116621 0.500852 0.0743474 0.0822965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0157836 0 0.0474523 0.690005 0.979012

CAGE analysis