Hb_062479_010

Information

Type -
Description -
Location Contig62479: 1-760
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G071200g
description hypothetical protein
nr
ID XP_007139936.1
description hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID K7MU50
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062479_010 0.0 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
2 Hb_001401_070 0.1337028487 - - glycogenin, putative [Ricinus communis]
3 Hb_064047_010 0.1436518453 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003371_260 0.1470588524 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
5 Hb_002571_010 0.1499790297 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_010381_110 0.1542875513 - - PRA1 family protein [Theobroma cacao]
7 Hb_001879_050 0.1552092328 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_000236_110 0.1562225217 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
9 Hb_117840_010 0.1574588754 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_005054_170 0.1588082546 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
11 Hb_002329_030 0.1606492174 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
12 Hb_000816_050 0.1610315531 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_000984_100 0.1614031484 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_002272_070 0.1653936969 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
15 Hb_004032_250 0.1700047982 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003371_210 0.1702889562 - - unnamed protein product [Vitis vinifera]
17 Hb_001148_040 0.1720043807 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
18 Hb_000808_160 0.1725115759 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
19 Hb_036568_010 0.1777961194 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
20 Hb_000025_400 0.1785653169 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]

Gene co-expression network

sample Hb_062479_010 Hb_062479_010 Hb_001401_070 Hb_001401_070 Hb_062479_010--Hb_001401_070 Hb_064047_010 Hb_064047_010 Hb_062479_010--Hb_064047_010 Hb_003371_260 Hb_003371_260 Hb_062479_010--Hb_003371_260 Hb_002571_010 Hb_002571_010 Hb_062479_010--Hb_002571_010 Hb_010381_110 Hb_010381_110 Hb_062479_010--Hb_010381_110 Hb_001879_050 Hb_001879_050 Hb_062479_010--Hb_001879_050 Hb_002329_030 Hb_002329_030 Hb_001401_070--Hb_002329_030 Hb_001148_040 Hb_001148_040 Hb_001401_070--Hb_001148_040 Hb_140848_010 Hb_140848_010 Hb_001401_070--Hb_140848_010 Hb_005183_200 Hb_005183_200 Hb_001401_070--Hb_005183_200 Hb_073171_010 Hb_073171_010 Hb_001401_070--Hb_073171_010 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_002324_040 Hb_002324_040 Hb_064047_010--Hb_002324_040 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_003371_210 Hb_003371_210 Hb_003371_260--Hb_003371_210 Hb_066320_010 Hb_066320_010 Hb_003371_260--Hb_066320_010 Hb_000431_030 Hb_000431_030 Hb_003371_260--Hb_000431_030 Hb_002239_030 Hb_002239_030 Hb_003371_260--Hb_002239_030 Hb_003371_260--Hb_010381_110 Hb_014361_130 Hb_014361_130 Hb_003371_260--Hb_014361_130 Hb_000808_160 Hb_000808_160 Hb_002571_010--Hb_000808_160 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_002571_010--Hb_001879_050 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_000172_010 Hb_000172_010 Hb_001879_050--Hb_000172_010 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002609_150 Hb_002609_150 Hb_001879_050--Hb_002609_150 Hb_001879_050--Hb_001148_040 Hb_000579_220 Hb_000579_220 Hb_001879_050--Hb_000579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39032 12.2818 0.69571 8.08674 0.334124 0.498302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.340957 0.0893061 0.462827 4.7486 3.9221

CAGE analysis