Hb_001401_070

Information

Type -
Description -
Location Contig1401: 67843-69943
Sequence    

Annotation

kegg
ID rcu:RCOM_1590700
description glycogenin, putative (EC:2.4.1.186)
nr
ID XP_002510223.1
description glycogenin, putative [Ricinus communis]
swissprot
ID Q8GWW4
description UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1
trembl
ID B9R7D0
description Hexosyltransferase OS=Ricinus communis GN=RCOM_1590700 PE=3 SV=1
Gene Ontology
ID GO:0005794
description udp-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_070 0.0 - - glycogenin, putative [Ricinus communis]
2 Hb_062479_010 0.1337028487 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
3 Hb_002329_030 0.1409743566 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
4 Hb_001148_040 0.1426844302 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
5 Hb_140848_010 0.1473771886 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
6 Hb_005183_200 0.1488458849 - - EG964 [Manihot glaziovii]
7 Hb_073171_010 0.1503473678 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
8 Hb_000236_110 0.1515508969 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
9 Hb_015473_010 0.1528546056 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_001823_070 0.1544067572 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
11 Hb_052764_080 0.1564468201 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
12 Hb_000007_210 0.1570774149 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
13 Hb_002272_070 0.1570779657 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
14 Hb_003430_020 0.1600252558 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
15 Hb_126466_010 0.1603520787 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_006364_020 0.1609547716 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
17 Hb_004044_030 0.1628324456 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
18 Hb_001879_050 0.1631826348 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_001259_100 0.1633853552 - - chloride channel-like family protein [Populus trichocarpa]
20 Hb_000429_110 0.1642505567 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]

Gene co-expression network

sample Hb_001401_070 Hb_001401_070 Hb_062479_010 Hb_062479_010 Hb_001401_070--Hb_062479_010 Hb_002329_030 Hb_002329_030 Hb_001401_070--Hb_002329_030 Hb_001148_040 Hb_001148_040 Hb_001401_070--Hb_001148_040 Hb_140848_010 Hb_140848_010 Hb_001401_070--Hb_140848_010 Hb_005183_200 Hb_005183_200 Hb_001401_070--Hb_005183_200 Hb_073171_010 Hb_073171_010 Hb_001401_070--Hb_073171_010 Hb_064047_010 Hb_064047_010 Hb_062479_010--Hb_064047_010 Hb_003371_260 Hb_003371_260 Hb_062479_010--Hb_003371_260 Hb_002571_010 Hb_002571_010 Hb_062479_010--Hb_002571_010 Hb_010381_110 Hb_010381_110 Hb_062479_010--Hb_010381_110 Hb_001879_050 Hb_001879_050 Hb_062479_010--Hb_001879_050 Hb_002272_070 Hb_002272_070 Hb_002329_030--Hb_002272_070 Hb_000072_160 Hb_000072_160 Hb_002329_030--Hb_000072_160 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_014361_130 Hb_014361_130 Hb_002329_030--Hb_014361_130 Hb_006615_190 Hb_006615_190 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_001148_040--Hb_140848_010 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_002735_010 Hb_002735_010 Hb_140848_010--Hb_002735_010 Hb_015473_010 Hb_015473_010 Hb_140848_010--Hb_015473_010 Hb_002053_090 Hb_002053_090 Hb_140848_010--Hb_002053_090 Hb_000152_250 Hb_000152_250 Hb_140848_010--Hb_000152_250 Hb_002110_210 Hb_002110_210 Hb_140848_010--Hb_002110_210 Hb_003430_020 Hb_003430_020 Hb_005183_200--Hb_003430_020 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_052764_080 Hb_052764_080 Hb_005183_200--Hb_052764_080 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_001259_100 Hb_001259_100 Hb_073171_010--Hb_001259_100 Hb_073171_010--Hb_052764_080 Hb_073171_010--Hb_000152_250 Hb_073171_010--Hb_015473_010 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414523 2.42657 0.110637 1.58456 0.054299 0.0303443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0759632 0.0597676 0 1.32504 0.54558

CAGE analysis