Hb_001754_200

Information

Type -
Description -
Location Contig1754: 137084-138601
Sequence    

Annotation

kegg
ID rcu:RCOM_0680800
description hypothetical protein
nr
ID XP_012083919.1
description PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
swissprot
ID Q941L2
description BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1
trembl
ID A0A067JYD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18863 PE=4 SV=1
Gene Ontology
ID GO:0005515
description shock protein src2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_200 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
2 Hb_000094_010 0.1182052166 - - lrr receptor protein kinase, putative [Ricinus communis]
3 Hb_002571_010 0.1294106807 - - cationic amino acid transporter, putative [Ricinus communis]
4 Hb_003914_050 0.1352287829 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
5 Hb_000522_130 0.1364577329 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
6 Hb_033312_090 0.1480931691 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
7 Hb_065525_010 0.1482741957 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
8 Hb_000359_080 0.1486582022 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
9 Hb_001619_160 0.14884367 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
10 Hb_008040_060 0.1502966218 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
11 Hb_000808_160 0.1506811735 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
12 Hb_010921_060 0.1514234261 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002600_010 0.1528815274 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
14 Hb_000819_010 0.1533080471 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
15 Hb_061350_010 0.1542083051 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
16 Hb_073119_010 0.1542732936 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_002239_020 0.1549086261 - - MLO, putative [Theobroma cacao]
18 Hb_013405_100 0.1550946804 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
19 Hb_000116_290 0.1553937783 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
20 Hb_000668_160 0.1568475888 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001754_200 Hb_001754_200 Hb_000094_010 Hb_000094_010 Hb_001754_200--Hb_000094_010 Hb_002571_010 Hb_002571_010 Hb_001754_200--Hb_002571_010 Hb_003914_050 Hb_003914_050 Hb_001754_200--Hb_003914_050 Hb_000522_130 Hb_000522_130 Hb_001754_200--Hb_000522_130 Hb_033312_090 Hb_033312_090 Hb_001754_200--Hb_033312_090 Hb_065525_010 Hb_065525_010 Hb_001754_200--Hb_065525_010 Hb_002529_080 Hb_002529_080 Hb_000094_010--Hb_002529_080 Hb_000094_010--Hb_003914_050 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_008040_060 Hb_008040_060 Hb_000094_010--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_000094_010--Hb_000976_340 Hb_000094_010--Hb_000522_130 Hb_000808_160 Hb_000808_160 Hb_002571_010--Hb_000808_160 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_003914_050--Hb_002529_080 Hb_003914_050--Hb_008040_060 Hb_008667_030 Hb_008667_030 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180 Hb_000027_060 Hb_000027_060 Hb_003914_050--Hb_000027_060 Hb_000522_130--Hb_033312_090 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_033312_090--Hb_015882_020 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_033312_090--Hb_000705_130 Hb_033312_090--Hb_001538_050 Hb_033312_090--Hb_008040_060 Hb_001318_140 Hb_001318_140 Hb_065525_010--Hb_001318_140 Hb_001242_190 Hb_001242_190 Hb_065525_010--Hb_001242_190 Hb_013405_100 Hb_013405_100 Hb_065525_010--Hb_013405_100 Hb_001619_160 Hb_001619_160 Hb_065525_010--Hb_001619_160 Hb_006052_060 Hb_006052_060 Hb_065525_010--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_065525_010--Hb_149484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 41.3602 8.30611 12.1139 0.197092 0.211794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418438 2.01569 0.907065 9.94849 12.2639

CAGE analysis