Hb_019654_110

Information

Type -
Description -
Location Contig19654: 83483-84673
Sequence    

Annotation

kegg
ID rcu:RCOM_1599830
description ubiquitin-protein ligase, putative
nr
ID XP_012073706.1
description PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID A0A067KPD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08149 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein skip23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19715: 83239-86047 , PASA_asmbl_19716: 84590-85473 , PASA_asmbl_19717: 84599-84934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_110 0.0 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
2 Hb_000416_060 0.0984226173 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
3 Hb_029584_100 0.105702068 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
4 Hb_003006_080 0.1130072458 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_002151_100 0.125184086 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
6 Hb_005588_120 0.1284225939 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001235_130 0.1290620631 - - -
8 Hb_009535_030 0.1318323284 - - CP2 [Hevea brasiliensis]
9 Hb_001699_170 0.135093481 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029879_120 0.1372912433 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004030_060 0.1385311177 - - receptor protein kinase zmpk1, putative [Ricinus communis]
12 Hb_000800_010 0.1390465508 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
13 Hb_000157_140 0.1402030611 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_001473_170 0.1406047147 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_004449_250 0.1408566987 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
16 Hb_102763_010 0.141846367 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
17 Hb_007313_040 0.1419061165 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
18 Hb_000258_050 0.1419775632 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
19 Hb_002311_130 0.1428449761 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
20 Hb_011174_080 0.1429610531 - - PREDICTED: sulfite oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_019654_110 Hb_019654_110 Hb_000416_060 Hb_000416_060 Hb_019654_110--Hb_000416_060 Hb_029584_100 Hb_029584_100 Hb_019654_110--Hb_029584_100 Hb_003006_080 Hb_003006_080 Hb_019654_110--Hb_003006_080 Hb_002151_100 Hb_002151_100 Hb_019654_110--Hb_002151_100 Hb_005588_120 Hb_005588_120 Hb_019654_110--Hb_005588_120 Hb_001235_130 Hb_001235_130 Hb_019654_110--Hb_001235_130 Hb_000416_060--Hb_005588_120 Hb_001699_170 Hb_001699_170 Hb_000416_060--Hb_001699_170 Hb_000800_010 Hb_000800_010 Hb_000416_060--Hb_000800_010 Hb_001404_090 Hb_001404_090 Hb_000416_060--Hb_001404_090 Hb_132840_030 Hb_132840_030 Hb_000416_060--Hb_132840_030 Hb_009535_030 Hb_009535_030 Hb_029584_100--Hb_009535_030 Hb_001247_270 Hb_001247_270 Hb_029584_100--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_029584_100--Hb_007229_050 Hb_029584_100--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_029584_100--Hb_098533_010 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_009646_010 Hb_009646_010 Hb_002151_100--Hb_009646_010 Hb_002235_310 Hb_002235_310 Hb_002151_100--Hb_002235_310 Hb_053575_020 Hb_053575_020 Hb_002151_100--Hb_053575_020 Hb_003506_020 Hb_003506_020 Hb_002151_100--Hb_003506_020 Hb_000056_280 Hb_000056_280 Hb_002151_100--Hb_000056_280 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_004129_010 Hb_004129_010 Hb_005588_120--Hb_004129_010 Hb_005588_120--Hb_132840_030 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_001235_130--Hb_000256_160 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_001235_130--Hb_009535_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.371257 3.78637 1.28266 4.73716 0.572947 0.71948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.655005 1.19148 0.41917 3.39313 4.26342

CAGE analysis