Hb_000175_270

Information

Type -
Description -
Location Contig175: 160252-166114
Sequence    

Annotation

kegg
ID rcu:RCOM_0900000
description Nucleosome-binding protein, putative
nr
ID XP_012073176.1
description PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
swissprot
ID Q9LW00
description Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1
trembl
ID A0A067KZ09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16694: 160300-166102 , PASA_asmbl_16695: 160323-166111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_270 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
2 Hb_187005_010 0.0727130842 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
3 Hb_001499_070 0.0842368882 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
4 Hb_000221_180 0.1026251994 - - VQ motif-containing family protein [Populus trichocarpa]
5 Hb_014006_010 0.1151950472 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
6 Hb_019863_060 0.1195158739 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
7 Hb_000340_360 0.1200537723 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
8 Hb_005183_140 0.1221145172 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_001514_240 0.1233287178 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
10 Hb_001408_020 0.1253518099 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
11 Hb_073973_020 0.1256322367 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
12 Hb_000321_120 0.1273228385 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
13 Hb_029695_120 0.1281812682 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
14 Hb_006794_020 0.1305882179 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
15 Hb_000417_410 0.1308016845 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
16 Hb_001484_090 0.1309487606 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_001404_090 0.1313040533 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
18 Hb_002383_050 0.1327090049 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
19 Hb_013405_180 0.1334863296 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_002804_010 0.1335071242 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]

Gene co-expression network

sample Hb_000175_270 Hb_000175_270 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_187005_010--Hb_001499_070 Hb_001514_240 Hb_001514_240 Hb_187005_010--Hb_001514_240 Hb_007290_070 Hb_007290_070 Hb_187005_010--Hb_007290_070 Hb_001408_020 Hb_001408_020 Hb_187005_010--Hb_001408_020 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010 Hb_001499_070--Hb_007290_070 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001499_070--Hb_001408_020 Hb_000221_180--Hb_014006_010 Hb_073973_020 Hb_073973_020 Hb_000221_180--Hb_073973_020 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_014006_010--Hb_013399_090 Hb_014006_010--Hb_000340_360 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_000473_150 Hb_000473_150 Hb_019863_060--Hb_000473_150 Hb_000059_130 Hb_000059_130 Hb_019863_060--Hb_000059_130 Hb_002154_020 Hb_002154_020 Hb_019863_060--Hb_002154_020 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32651 66.9137 38.7802 25.1382 8.0185 10.5263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14209 4.13152 2.72512 30.4982 60.1861

CAGE analysis