Hb_008494_090

Information

Type -
Description -
Location Contig8494: 108225-108716
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08390g
description POPTRDRAFT_767766; hypothetical protein
nr
ID XP_012074560.1
description PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60317: 106575-107361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008494_090 0.0 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
2 Hb_000365_220 0.0850926834 - - protein phosphatase-1, putative [Ricinus communis]
3 Hb_000522_010 0.0869065421 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
4 Hb_025045_010 0.1279383688 - - catalytic, putative [Ricinus communis]
5 Hb_003680_010 0.1294055542 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_067664_010 0.1296114116 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_002888_040 0.1303036699 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
8 Hb_001486_100 0.1310904688 - - tubulin alpha chain, putative [Ricinus communis]
9 Hb_003517_100 0.131730627 transcription factor TF Family: GRAS -
10 Hb_000917_210 0.1322096283 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001689_030 0.1347703495 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
12 Hb_000594_130 0.140461012 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_119327_010 0.1421729192 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
14 Hb_000203_210 0.1429626625 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
15 Hb_003177_090 0.1450697051 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
16 Hb_001124_140 0.1450952124 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
17 Hb_001883_010 0.147237292 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_001865_010 0.1479827361 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
19 Hb_005488_030 0.148354648 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
20 Hb_005568_050 0.1488254399 - - ascorbate peroxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_008494_090 Hb_008494_090 Hb_000365_220 Hb_000365_220 Hb_008494_090--Hb_000365_220 Hb_000522_010 Hb_000522_010 Hb_008494_090--Hb_000522_010 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_067664_010 Hb_067664_010 Hb_008494_090--Hb_067664_010 Hb_002888_040 Hb_002888_040 Hb_008494_090--Hb_002888_040 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_000522_010--Hb_003517_100 Hb_000522_010--Hb_000417_410 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_001821_060 Hb_001821_060 Hb_025045_010--Hb_001821_060 Hb_013968_010 Hb_013968_010 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_007765_130 Hb_007765_130 Hb_025045_010--Hb_007765_130 Hb_025045_010--Hb_002888_040 Hb_007035_010 Hb_007035_010 Hb_003680_010--Hb_007035_010 Hb_002615_080 Hb_002615_080 Hb_003680_010--Hb_002615_080 Hb_004785_200 Hb_004785_200 Hb_003680_010--Hb_004785_200 Hb_031862_200 Hb_031862_200 Hb_003680_010--Hb_031862_200 Hb_006827_030 Hb_006827_030 Hb_003680_010--Hb_006827_030 Hb_001883_010 Hb_001883_010 Hb_003680_010--Hb_001883_010 Hb_000032_600 Hb_000032_600 Hb_067664_010--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_067664_010--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_067664_010--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.914047 11.3455 10.8731 9.29863 0.170021 0.330252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79184 0.433122 0.365646 9.73801 20.7741

CAGE analysis