Hb_002383_050

Information

Type -
Description -
Location Contig2383: 30208-32920
Sequence    

Annotation

kegg
ID rcu:RCOM_0963860
description hypothetical protein
nr
ID XP_012065612.1
description PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L571
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16864 PE=4 SV=1
Gene Ontology
ID GO:0009706
description structural constituent of

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24997: 30055-32913 , PASA_asmbl_24999: 31348-31809 , PASA_asmbl_25000: 32453-32655
cDNA
(Sanger)
(ID:Location)		 035_I17.ab1: 30132-32700

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002383_050 0.0 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
2 Hb_013968_010 0.0874835573 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
3 Hb_007290_070 0.1061464635 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
4 Hb_000260_160 0.1069327434 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
5 Hb_001499_070 0.1079187663 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
6 Hb_000094_150 0.1123108298 - - -
7 Hb_001514_240 0.1137440706 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
8 Hb_001103_060 0.121241669 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
9 Hb_001386_020 0.1222370085 - - conserved hypothetical protein [Ricinus communis]
10 Hb_187005_010 0.1226147761 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
11 Hb_011188_010 0.1244465112 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_001865_010 0.1244795329 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
13 Hb_004052_110 0.1279920998 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
14 Hb_001059_060 0.1283344618 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
15 Hb_083078_010 0.1295962902 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
16 Hb_004117_270 0.1297394114 - - -
17 Hb_000933_110 0.1297970095 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
18 Hb_017914_010 0.1306707477 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
19 Hb_001404_090 0.1311329176 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
20 Hb_000175_270 0.1327090049 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002383_050 Hb_002383_050 Hb_013968_010 Hb_013968_010 Hb_002383_050--Hb_013968_010 Hb_007290_070 Hb_007290_070 Hb_002383_050--Hb_007290_070 Hb_000260_160 Hb_000260_160 Hb_002383_050--Hb_000260_160 Hb_001499_070 Hb_001499_070 Hb_002383_050--Hb_001499_070 Hb_000094_150 Hb_000094_150 Hb_002383_050--Hb_000094_150 Hb_001514_240 Hb_001514_240 Hb_002383_050--Hb_001514_240 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_000260_160--Hb_011188_010 Hb_008120_040 Hb_008120_040 Hb_000260_160--Hb_008120_040 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_000260_160--Hb_013968_010 Hb_004117_270 Hb_004117_270 Hb_000260_160--Hb_004117_270 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_001499_070--Hb_001514_240 Hb_001499_070--Hb_013968_010 Hb_001499_070--Hb_001408_020 Hb_002010_090 Hb_002010_090 Hb_000094_150--Hb_002010_090 Hb_000256_160 Hb_000256_160 Hb_000094_150--Hb_000256_160 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001514_240--Hb_187005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40897 39.6074 46.1733 22.5612 8.82802 3.16271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.98256 6.03134 2.79764 24.1346 44.1451

CAGE analysis